BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH05RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 940 0.0
>3x_Contig1486
Length = 12131
Score = 940 bits (474), Expect = 0.0
Identities = 543/561 (96%), Gaps = 4/561 (0%)
Strand = Plus / Minus
Query: 263 aacaataatcccataaaactaagctcaaacgaatgcaacatggcactagagactgacatt 322
||||||||||| || ||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct: 2753 aacaataatcctattaaactaatatcaaacgaattcaacatggcactagtgactgacatt 2694
Query: 323 aataaaggataacggcgatctgactatacttacactaacatcagacacttcaatacaccg 382
||||||||||||| ||||||||| |||| ||||||||||||| ||| |||||||||||||
Sbjct: 2693 aataaaggataactgcgatctgattatagttacactaacatc-gac-cttcaatacaccg 2636
Query: 383 aaagattctacaaaaagtctaaaatgtccggctctaaagtacgagctcctatggtacctc 442
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2635 aaagattctagaaaaagtctaaaatgtccggctctaaagtaggagctcctatggtacctc 2576
Query: 443 caatcaattgcatatacaactaccttcatcatcagacaacagtaacgttttggttatacg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 caatcaattgcatatacaactaccttcatcatcagacaacagtaacgttttggttatacg 2516
Query: 503 aacaagtacagacacgtataagaggcaagatcagaggctttgatgagttcatgaatgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 aacaagtacagacacgtataagaggcaagatcagaggctttgatgagttcatgaatgtgg 2456
Query: 563 taatagatgacgctttcgaaatagctgtagatccgaaaagtggtaaagagagcgatgata 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 taatagatgacgctttcgaaatagctgtagatccgaaaagtggtaaagagagcgatgata 2396
Query: 623 aagcagtgtttcttgggagaattatgttgaaaggtgataatataacacttgttgtggcaa 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2395 aagcagtgtttcttgggagaattatgttgaaaggtgataatataacacttgttgtggcaa 2336
Query: 683 attgataatgcctactcagaanatgataataggatgaaaggaagatgcttagagtgtaga 742
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 2335 attgataatgcctactcagaaaatgataataggatgaaagaaagatgcttagagtgtaga 2276
Query: 743 agcattgatcggactctgtcgtgtaattatataagcctgtatattataaccgaaaaaatg 802
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 2275 agcattgatcggactctgtcgtgtaattatataagcctgtatattataa-cggaaaaatg 2217
Query: 803 aaaggcacctgaaatttcgat 823
||||||| |||||||||||||
Sbjct: 2216 aaaggca-ctgaaatttcgat 2197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5431
Number of Sequences: 1807
Number of extensions: 5431
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)