BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZH06RM1.SCF screened BAC_end
         (984 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1313                                                        1047   0.0  

>3x_Contig1313 
          Length = 8010

 Score = 1047 bits (528), Expect = 0.0
 Identities = 674/710 (94%), Gaps = 10/710 (1%)
 Strand = Plus / Plus

                                                                        
Query: 55   cttgattacatgtctttttattatatttaatgtgttcttagaatttcccaatgtagacct 114
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 cttgattacat-tctttttattatatttaatgtgttcttagaatttcccaatgtagacct 2776

                                                                        
Query: 115  ctctctattcttgtccttt-aatagtttttttctccactaaggaatagcctttgtttaaa 173
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 ctctctattcttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaa 2836

                                                                        
Query: 174  tcccaaacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcg 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 tcccaaacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcg 2896

                                                                        
Query: 234  gcaagtatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgt 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 gcaagtatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgt 2956

                                                                        
Query: 294  taagaaaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccact 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 taagaaaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccact 3016

                                                                        
Query: 354  agtgataccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgca 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 agtgataccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgca 3076

                                                                        
Query: 414  tggactcattataccaagatatacgatgaatgctatattccaaaaccagaagattttgca 473
            |||||||||||||||||||||||||| |||||||||||||||||||||||  |||| |||
Sbjct: 3077 tggactcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggca 3136

                                                                        
Query: 474  cctgatgcttggaaagtggtttgtgattatgaacgtgc-agcagaaagtgtgagctaagt 532
            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 3137 cctgatgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagt 3196

                                                                        
Query: 533  tcaatcaacgaactagaattgcangatcatttt-aagatgtggtgatcaaagatctnctg 591
            ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 3197 tcaatcaacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctg 3256

                                                                        
Query: 592  cagctcgtt-aggaaaaagtagat-tcagaccctga-tacaggatctgatgca-cagtat 647
            ||||||||| |||||||||||||| |||||||  || ||||||| |||||||| ||||||
Sbjct: 3257 cagctcgttaaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtat 3316

                                                                        
Query: 648  -accagacgtacgtgctttcgttgaactggtccaaagaccctattccccaacttaccggg 706
             || ||||||||||||||||||||||||||||||| || |||  | | | || || ||||
Sbjct: 3317 aacaagacgtacgtgctttcgttgaactggtccaagga-cctcatacacgacctaacggg 3375

                                                              
Query: 707  tattttcaattccgatttcttctgttacgatttaaaatcacgtgatgggg 756
            ||||| ||| || ||| ||| |||| |||| |||||||||||||||||||
Sbjct: 3376 tatttccaaatcggatatctactgtaacgaattaaaatcacgtgatgggg 3425


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8500
Number of Sequences: 1807
Number of extensions: 8500
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)