BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH07FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 1534 0.0
>3x_Contig1016
Length = 4444
Score = 1534 bits (774), Expect = 0.0
Identities = 842/857 (98%), Gaps = 6/857 (0%)
Strand = Plus / Minus
Query: 80 gcttatagatgtaggtatgatcagcaacagcggtatcgtagcatcctcacacgatttagg 139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 gcttatagatataggtatgatcagcaacagcggtatcgtagcatcctcacacgatttagg 2580
Query: 140 ttcgagctatgtgcaagatcaaagagaaattttacatgacgtacccttaacggtgacttc 199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2579 ttcgagctatgtgcaagatcaaagagaaattttacatgacgtacccttaacggt-acttc 2521
Query: 200 ccacgttcgaaaataaatcttgacacaaggaaggcgattcaagaatttcacaaaaagtac 259
||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 cca-gttcgaaaataaaacaggacacaaggaaggcgattcaagaatttcacaaaaagtac 2462
Query: 260 ttcgctaacctagtgaaaaaccttaccgtggaatataacaagccattggtcgccaatatc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 ttcgctaacctagtgaaaaaccttaccgtggaatataacaagccattggtcgccaatatc 2402
Query: 320 gaatcgtgacgcaataggtttctgcactattagcgcactcaaaatgggttcaccaaatgt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 gaatcgtgacgcaataggtttctgcactattagcgcactcaaaatgggttcaccaaatgt 2342
Query: 380 tgaaatgcgatatatcactatatacgtctgaacatttctcaatcttgtaaaggtactttc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 tgaaatgcgatatatcactatatacgtctgaacatttctcaatcttgtaaaggtactttc 2282
Query: 440 actctctttattgaaaacattgaaatatacaaactttgtagaatagacatataaaacaat 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 actctctttattgaaaacattgaaatatacaaactttgtagaatagacatataaaacaat 2222
Query: 500 acgcagtatacgattttggtttgtcaaaggagccaattaggtacggttagagtaagtgcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 acgcagtatacgattttggtttgtcaaaggagccaattaggtacggttagagtaagtgcc 2162
Query: 560 ttgactgctgcatatatactgaaatttgttcatttaagaagccaaggaagcgaggaggca 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 ttgactgctgcatatatactgaaatttgttcatttaagaagccaaggaagcgaggaggca 2102
Query: 620 aaaaaaaaagcataaacaaactggaaagcgccaaatactatggctgtgaaaagaagcaga 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 aaaaaaaaagcataaacaaactggaaagcgccaaatactatggctgtgaaaagaagcaga 2042
Query: 680 tcagaagatcccagtgaggaacccgaacaaaagcattcaaaacagaattatgtaccaaga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 tcagaagatcccagtgaggaacccgaacaaaagcattcaaaacagaattatgtaccaaga 1982
Query: 740 tatacaccaggaaaacgtcctagaagcggcgctctacccaaagtggattatgtgcaccct 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tatacaccaggaaaacgtcctagaagcggcgctctacccaaagtggattatgtgcaccct 1922
Query: 800 ttggatcctacanaaaagctcattgtagatctagattggactattcctaagttgaaattt 859
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1921 ttggatcctacagaagagctcattgtagatctagattggactattcctaagttg-aattt 1863
Query: 860 gttcattcgcatttactttggataaatttattggaagctcacaagctctttattcaaaca 919
||||| ||||||||||||||||| |||||| | |||||||||||| |||||||||||||
Sbjct: 1862 gttca-tcgcatttactttggat-aatttagttgaagctcacaag-gctttattcaaaca 1806
Query: 920 ctttatcaaactaccca 936
|||||||||||||||||
Sbjct: 1805 ctttatcaaactaccca 1789
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7859
Number of Sequences: 1807
Number of extensions: 7859
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)