BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH07RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1322 0.0
>3x_Contig1654
Length = 17174
Score = 1322 bits (667), Expect = 0.0
Identities = 763/787 (96%), Gaps = 6/787 (0%)
Strand = Plus / Plus
Query: 78 caaatagaagactctcaaatcgatcggcgttatcgatgtatcaaatcagcaacctcaaga 137
||||| ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct: 2901 caaattgaagactctcaaatcaatcggtgttatcgatgtagcaaatcagcaacctcaaga 2960
Query: 138 aatcattactctgagctcaaagtaccgagttaacaatgttccgtaaaacactgactacac 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2961 aatcattactctgagctcaaagtaccgagttaacaatgttccgtaaaacactgactacac 3020
Query: 198 tagggcgccgtttatattctctgactccagaagagaagctgataactgataagttgagta 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3021 tagggcgccgtttatattctctgactccagaagagaagctgataactgataagttgagta 3080
Query: 258 aagagttgaatccctcttccatctctgttaatgacatcagcggaggatgcggatcgatgt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3081 aagagttgaatccctcttccatctctgttaatgacatcagcggaggatgcggatcgatgt 3140
Query: 318 tttctattaatattacaagtgataagttcaaaggattgtcgatagtgaaacaacataaac 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3141 tttctattaatattacaagtgataagttcaaaggattgtcgatagtgaaacaacataaac 3200
Query: 378 tagtaaatgagattttaaaagacgatattaaaagatggcatggtttgcaactccgtacca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3201 tagtaaatgagattttaaaagacgatattaaaagatggcatggtttgcaactccgtacca 3260
Query: 438 agaaagaataagcccaactcttcaacaaattctgaatttaacaaagcaatagactctgcg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3261 agaaagaataagcccaactcttcaacaaattctgaatttaacaaagcaatagactctgcg 3320
Query: 498 ccaatgtgcacttttcaacctgctgcttttcttgtatatatgatgacgtgaccttgacac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3321 ccaatgtgcacttttcaacctgctgcttttcttgtatatatgatgacgtgaccttgacac 3380
Query: 558 aacgagttgaagttatttttctatgtatgagagatacgaacccattgatacattggtatt 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3381 aacgagttgaagttatttttctatgtatgagagatacgaacccattgatacattggtatt 3440
Query: 618 tcacttaggtgatatttattctaaatagtttgacatggttaaaacctgctgtttaagtag 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3441 tcacttaggtgatatttattctaaatagtttgacatggttaaaacctgctgtttaagtag 3500
Query: 678 ttcctcttttaattattcacctagatgaagtaaaagggaaata-ttttaagtttaaaaag 736
|||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 3501 ttcctc-tttaattattcagctagatgaagtaaaatggaaatatttttaagtttaaaaag 3559
Query: 737 aaaaataaatc-atctatttggaatgatt-atttaaatcacttgcaggtattgaaag-aa 793
| ||||||||| ||||||| |||||||| |||||||||| |||||||||||||||| ||
Sbjct: 3560 agaaataaatctatctattatgaatgattaatttaaatcagttgcaggtattgaaagaaa 3619
Query: 794 gaatcgtttattcaaacgatttgaacttctttttgaatttcctctaaaattccctcctta 853
|| |||||||||||||||||| | || |||| |||| |||||||||| ||| ||||||||
Sbjct: 3620 gagtcgtttattcaaacgattcg-acctcttcttgagtttcctctaagatttcctcctta 3678
Query: 854 aattctt 860
| |||||
Sbjct: 3679 acttctt 3685
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8538
Number of Sequences: 1807
Number of extensions: 8538
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)