BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH08FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig551 1322 0.0
3x_Contig1326 311 1e-84
>3x_Contig551
Length = 2723
Score = 1322 bits (667), Expect = 0.0
Identities = 705/714 (98%), Gaps = 3/714 (0%)
Strand = Plus / Minus
Query: 229 cttgcttggctttccgtgacgatagatttgatgattgtgaaactttgttcagcgaagcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 cttgcttggctttccgtgacgatagatttgatgattgtgaaactttgttcagcgaagcca 2664
Query: 289 gaagaaagttcccaactgctccagaagttccaaacttttatgccgaaattttggctgcta 348
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2663 gaagaaagttcccaactgctccagaagttccaaacttntatgccgaaattttggctgcta 2604
Query: 349 agaactctctagatgctgccatcaagcaatacgatattgccatcaagttggaagatgctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 agaactctctagatgctgccatcaagcaatacgatattgccatcaagttggaagatgctt 2544
Query: 409 taccaggtattcacgtcggtattgctccaatgattggtaaggccactgctttgattagaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 taccaggtattcacgtcggtattgctccaatgattggtaaggccactgctttgattagaa 2484
Query: 469 acccaaccgttgaaaacttcgttgaagcttccgaattatttgaagaagcttgtaagatcg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 acccaaccgttgaaaacttcgttgaagcttccgaattatttgaagaagcttgtaagatcg 2424
Query: 529 atccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaacaagaagaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 atccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaacaagaagaaa 2364
Query: 589 ttgatgatgccattcaattgttcgaagatgctgccgatctctcaagatctttcgatgaaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 ttgatgatgccattcaattgttcgaagatgctgccgatctctcaagatctttcgatgaaa 2304
Query: 649 aactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcagagctgatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 aactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcagagctgatc 2244
Query: 709 cattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaaggtctcgcgt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 cattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaaggtctcgcgt 2184
Query: 769 aaattagcatgatattcaccgaatgaa-ttaattcatttcaatatgagtaaagctaccat 827
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 2183 aaattagcatgatattca-cgaatgaatttaattcatttcaatatgagtaaagctacaat 2125
Query: 828 agctcattgtttttgtctcaccttaatgtacataatggcaacataccatgcaacatctaa 887
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2124 agctcattgtttttgtctcaccttaatgaccataatggcaacataccatgcaacatctaa 2065
Query: 888 acgaatgaattaccaagaaagtttatgattttacaaaacaaaagttgtagcatt 941
||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 2064 acgaatgaattaccaagaaag-ttatgattttacaaacaaaaagttgtagcatt 2012
>3x_Contig1326
Length = 4875
Score = 311 bits (157), Expect = 1e-84
Identities = 171/173 (98%), Gaps = 2/173 (1%)
Strand = Plus / Minus
Query: 92 agatccaaactgctctgctgtttactatcatcgcggtcaaatgcattttgttgttgaaaa 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agatccaaactgctctgctgtttactatcatcgcggtcaaatgcattttgttgttgaaaa 119
Query: 152 cttcaaagaagctggtgccgatttcgataaggctaaggaattaaatccagaaaacatttt 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cttcaaagaagctggtgccgatttcgataaggctaaggaattaaatccagaaaacatttt 59
Query: 212 tgcctacatccaatgtgcttgcttggctttcc-gtgacg-atagatttgatga 262
|||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 58 tgcctacatccaatgtgcttgcttggctttcctgtgacgaatagatttgatga 6
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7436
Number of Sequences: 1807
Number of extensions: 7436
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)