BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH08RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 1193 0.0
>3x_Contig1489
Length = 10722
Score = 1193 bits (602), Expect = 0.0
Identities = 689/706 (97%), Gaps = 9/706 (1%)
Strand = Plus / Minus
Query: 49 aacatgaaatggcctctctccaaattgttgttatgatatgtgacatattgtattgctggt 108
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2708 aacatgaaatggcctctctccaaattattgttatgatatgtgacatattgtattgctggt 2649
Query: 109 ttacattgtttactagtatttgttcctcatacgtcgaaattgccattgattatagaaaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 ttacattgtttactagtatttgttcctcatacgtcgaaattgccattgattatagaaaat 2589
Query: 169 aaaaatgtaaagaatggaaataccttagaaagtacaaatatggatcagatgaaggctcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 aaaaatgtaaagaatggaaataccttagaaagtacaaatatggatcagatgaaggctcaa 2529
Query: 229 aatgaataccgtgccttcggtttactgtctgtgtagcagttagaggattcatagaagaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2528 aatgaataccgtgccttcggtttactgtctgtgtagcagttagaggattcatagaagaca 2469
Query: 289 atagatatgaatgcccccacttatctatgttttgaagagaggcgaaagatattagaagaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 atagatatgaatgcccccacttatctatgttttgaagagaggcgaaagatattagaagaa 2409
Query: 349 ttagaagtcatcgaggatgctatttcgtccagactacgaagaaatccagaaatcttttac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2408 ttagaagtcatcgaggatgctatttcgtccagactacgaagaaatccagaaatcttttac 2349
Query: 409 agatttaacgaagcactgcataatctgggagttgaagcttgggcggtacctaagctagac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 agatttaacgaagcactgcataatctgggagttgaagcttgggcggtacctaagctagac 2289
Query: 469 gtttctgccaacaggatttacaggagcaagataagcatacgttctagaaagcatatcaaa 528
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 2288 gtttctgccaacaggatttacaggagcaagaaaagcaaacgttctagaaagcaaatcaaa 2229
Query: 529 gcacaagaatatgaaatcgccttatttcttggaagatatagaagactgttgaaatctttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2228 gcacaagaatatgaaatcgccttatttcttggaagatatagaagactgttgaaatctttg 2169
Query: 589 c-aaagcacaaattgagtgaagaacatttagaatactttaagggatac-aacgctagctt 646
| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 2168 caaaagcacaaattgagtgaagaacatttagaatacttt-agggatacaaacgctagctt 2110
Query: 647 tg-acagtttgaaa-cgtca-cacaaaagt-ttagagggtcaagtaaactcacgttctct 702
|| ||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 2109 tgaacagtttgaaaccgtcaccacagaagtattagagggtcaagtaaactcacgttctct 2050
Query: 703 ggttgaaagtc-aatctgactatgaaaagttttttggccctcaagc 747
||||| ||||| ||||||||||||| | ||||| ||||||||||||
Sbjct: 2049 ggttg-aagtcaaatctgactatgagatgttttctggccctcaagc 2005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7532
Number of Sequences: 1807
Number of extensions: 7532
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)