BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH09FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1415 0.0
>3x_Contig1017
Length = 3431
Score = 1415 bits (714), Expect = 0.0
Identities = 790/809 (97%), Gaps = 6/809 (0%)
Strand = Plus / Plus
Query: 112 tttgtcaaataatctacatctacaataaccgaatcgttgtggcactccacggtaatatgg 171
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 397 tttgtcaaataatcgacatctacaatagccgaatcgttgtggcactccacggtaatatgg 456
Query: 172 atttcgaaatctttaccgtgatactgggttacatcattatacttccatactttgtgttca 231
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 457 atttcgaaatctttaccgtgatactgggttacatcattatacttccatacaatgtgttca 516
Query: 232 aacgattcttcctttgccttgtctttaaacttcaaatcaggcagcttgattctctctttg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aacgattcttcctttgccttgtctttaaacttcaaatcaggcagcttgattctctctttg 576
Query: 292 atgtcctttagcaaatgtttttcgatatgctgatgcaaatgcctcacaaacttctttgaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgtcctttagcaaatgtttttcgatatgctgatgcaaatgcctcacaaacttctttgaa 636
Query: 352 tgtgaattggctgaatccttaatcttttcaggatcctcatgcgattcgtgtagtacaaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgtgaattggctgaatccttaatcttttcaggatcctcatgcgattcgtgtagtacaaat 696
Query: 412 ggaggatagtacttcaaatgacaatgaacgtgatcaaattcctcatcttcagtttcgttc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggaggatagtacttcaaatgacaatgaacgtgatcaaattcctcatcttcagtttcgttc 756
Query: 472 ttaatgaatgtttcgaaatcgttcaaatcttcaaacaccttgacgacttctccggacttg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttaatgaatgtttcgaaatcgttcaaatcttcaaacaccttgacgacttctccggacttg 816
Query: 532 gtggtgacattagcaaactttggtcctttatccttcttggtcatttctgtgaatattctt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gtggtgacattagcaaactttggtcctttatccttcttggtcatttctgtgaatattctt 876
Query: 592 ctctgatgtagagtgtgtctgtgtgttaaaagttaatatatgtattaactattgcaaatt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ctctgatgtagagtgtgtctgtgtgttaaaagttaatatatgtattaactattgcaaatt 936
Query: 652 gatgcttgtgtaccgatggtagcactcaagaaaaaggaaaaacacataaacttanggtat 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 937 gatgcttgtgtaccgatggtagcactcaagaaaaaggaaaaacacataaacttagggtat 996
Query: 712 acggcaaagaggattagcaaacttggagttaggattttaccctctatttatatgccactt 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 acggcaaagaggattagcaaacttggagttaggattttaccctctatttatatgccactt 1056
Query: 772 ttacctttgttgncttatgtgtttttactccaaca-ccctnaacctaattccacatanat 830
|||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| ||
Sbjct: 1057 ttacctttgttgtcttatgtgtttttactccaacacccctaaccctaattccacatagat 1116
Query: 831 ccaa-cctaattccgcanagttacaaattaacacaaccagcttaga-atagcacaccacc 888
|||| |||||||||||| || ||||||| |||||||||||| |||| |||||||||||||
Sbjct: 1117 ccaaccctaattccgcagaggtacaaataaacacaaccagc-tagagatagcacaccacc 1175
Query: 889 atggaggctaggtttgcacattacacacc 917
|| ||||||||| |||||||| |||||||
Sbjct: 1176 at-gaggctagg-ttgcacataacacacc 1202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6673
Number of Sequences: 1807
Number of extensions: 6673
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)