BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZH09RM1.SCF screened BAC_end
         (978 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig428                                                          684   0.0  
3x_Contig1196                                                         139   1e-32

>3x_Contig428 
          Length = 1780

 Score =  684 bits (345), Expect = 0.0
 Identities = 372/381 (97%)
 Strand = Plus / Plus

                                                                        
Query: 85   cttatgctcgattaagtcagcggctgcaattgaatcatccatcgccgattatgaacttcc 144
            |||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 cttaagctcgtttaagtctgcagctgcaattgaatcatccatcgccgattatgaacttcc 1458

                                                                        
Query: 145  cgatgttgctaattcttcggaaacagtaactatgaattcgctttcctgatccgctgtttt 204
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 cgatgttgttaattcttcggaaacagtaactatgaattcgctttcctgatccgctgtttt 1518

                                                                        
Query: 205  ggtaatggaggaagaaatagtagtgctggatgagaagctcgatttagcttctgtatcctt 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 ggtaatggaggaagaaatagtagtgctggatgagaagctcgatttagcttctgtatcctt 1578

                                                                        
Query: 265  ttcggcagatgaaatgtctgattcttcgagttctgttttatcagtggctacagacagttc 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 ttcggcagatgaaatgtctgattcttcgagttctgttttatcagtggctacagacagttc 1638

                                                                        
Query: 325  aatttctgtcacaacgactgtagatgtgacaagttctacgtcaaggttagactttatttg 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 aatttctgtcacaacgactgtagatgtgacaagttctacgtcaaggttagactttatttg 1698

                                                                        
Query: 385  atcgatatgcgtagcggtatcttcttccgcttgtaatgaggtacctggataatgatcttc 444
            |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 atcgatatgcgtcgggttatcttcttccgcttgtaatgaggtacctggataatgatcttc 1758

                                 
Query: 445  tgattggacttcatgagcgac 465
            ||||||||| |||||||||||
Sbjct: 1759 tgattggacctcatgagcgac 1779


>3x_Contig1196 
          Length = 5660

 Score =  139 bits (70), Expect = 1e-32
 Identities = 100/110 (90%)
 Strand = Plus / Plus

                                                                       
Query: 633 tgtattcgatgtctcttctatcaattcggataaagaggaaacgttggcaatttcatcatc 692
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 14  tgtattcgatgtctcttctatcaattcggataaagaggaaacgttgtcaatatcatcatc 73

                                                             
Query: 693 cgaagattcccttaatgagaatgatgcttcgacagaagatgtaccttctg 742
            ||  |||| || |||||||  ||||||||||||||||||||| ||||||
Sbjct: 74  agagaattcgctaaatgagatggatgcttcgacagaagatgtagcttctg 123


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,362
Number of Sequences: 1807
Number of extensions: 25362
Number of successful extensions: 175
Number of sequences better than 1.0e-20: 2
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)