BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC8ZH09RM1.SCF screened BAC_end (978 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig428 684 0.0 3x_Contig1196 139 1e-32 >3x_Contig428 Length = 1780 Score = 684 bits (345), Expect = 0.0 Identities = 372/381 (97%) Strand = Plus / Plus Query: 85 cttatgctcgattaagtcagcggctgcaattgaatcatccatcgccgattatgaacttcc 144 |||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1399 cttaagctcgtttaagtctgcagctgcaattgaatcatccatcgccgattatgaacttcc 1458 Query: 145 cgatgttgctaattcttcggaaacagtaactatgaattcgctttcctgatccgctgtttt 204 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1459 cgatgttgttaattcttcggaaacagtaactatgaattcgctttcctgatccgctgtttt 1518 Query: 205 ggtaatggaggaagaaatagtagtgctggatgagaagctcgatttagcttctgtatcctt 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1519 ggtaatggaggaagaaatagtagtgctggatgagaagctcgatttagcttctgtatcctt 1578 Query: 265 ttcggcagatgaaatgtctgattcttcgagttctgttttatcagtggctacagacagttc 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 ttcggcagatgaaatgtctgattcttcgagttctgttttatcagtggctacagacagttc 1638 Query: 325 aatttctgtcacaacgactgtagatgtgacaagttctacgtcaaggttagactttatttg 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1639 aatttctgtcacaacgactgtagatgtgacaagttctacgtcaaggttagactttatttg 1698 Query: 385 atcgatatgcgtagcggtatcttcttccgcttgtaatgaggtacctggataatgatcttc 444 |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1699 atcgatatgcgtcgggttatcttcttccgcttgtaatgaggtacctggataatgatcttc 1758 Query: 445 tgattggacttcatgagcgac 465 ||||||||| ||||||||||| Sbjct: 1759 tgattggacctcatgagcgac 1779 >3x_Contig1196 Length = 5660 Score = 139 bits (70), Expect = 1e-32 Identities = 100/110 (90%) Strand = Plus / Plus Query: 633 tgtattcgatgtctcttctatcaattcggataaagaggaaacgttggcaatttcatcatc 692 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 14 tgtattcgatgtctcttctatcaattcggataaagaggaaacgttgtcaatatcatcatc 73 Query: 693 cgaagattcccttaatgagaatgatgcttcgacagaagatgtaccttctg 742 || |||| || ||||||| ||||||||||||||||||||| |||||| Sbjct: 74 agagaattcgctaaatgagatggatgcttcgacagaagatgtagcttctg 123 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,362 Number of Sequences: 1807 Number of extensions: 25362 Number of successful extensions: 175 Number of sequences better than 1.0e-20: 2 length of query: 978 length of database: 10,358,551 effective HSP length: 16 effective length of query: 962 effective length of database: 10,329,639 effective search space: 9937112718 effective search space used: 9937112718 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)