BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH10FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig993 1610 0.0
>3x_Contig993
Length = 4399
Score = 1610 bits (812), Expect = 0.0
Identities = 827/831 (99%), Gaps = 1/831 (0%)
Strand = Plus / Minus
Query: 88 ctcggaattggtgacatcgaatctttgatggaacgtttccaaacagtatctgaccaagat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 ctcggaattggtgacatcgaatctttgatggaacgtttccaaacagtatctgaccaagat 1643
Query: 148 gatgcaaagaatactttagagaatatccaacagggtaaattcactctacttgatttcaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcaaagaatactttagagaatatccaacagggtaaattcactctacttgatttcaag 1583
Query: 208 aaccagatgcaaactttaatgaagatgggtcccctatcaaacatcgcgaatatgattcct 267
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 aaccagatgcaaacaataatgaagatgggtcccctatcaaacatcgcgaatatgattcct 1523
Query: 268 ggtatggggaatatgcttaaccaattctcagaagaggaaacttcaaagaaaatgaagaca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 ggtatggggaatatgcttaaccaattctcagaagaggaaacttcaaagaaaatgaagaca 1463
Query: 328 atggtgtatatttttgattcaatgaccaagaaggaacttgaatcggacggtagaatcttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 atggtgtatatttttgattcaatgaccaagaaggaacttgaatcggacggtagaatcttc 1403
Query: 388 atcgatgaacctagtaggttggtaagagtggcaaagggttccggaacaacggtatttgat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 atcgatgaacctagtaggttggtaagagtggcaaagggttccggaacaacggtatttgat 1343
Query: 448 attgaaatgcttttaatgcaacaacagatgatggcaagaatggcgcaaacaactaaacaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 attgaaatgcttttaatgcaacaacagatgatggcaagaatggcgcaaacaactaaacaa 1283
Query: 508 atgggaggactcccaacaaaaggcggaatgccaccaaaggcaggtatgccttctatccct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 atgggaggactcccaacaaaaggcggaatgccaccaaaggcaggtatgccttctatccct 1223
Query: 568 ggtatgccatcaatccctggtatgccaaatatctctccacaaatgatgcaacaggctcaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 ggtatgccatcaatccctggtatgccaaatatctctccacaaatgatgcaacaggctcaa 1163
Query: 628 cagcgtatgagacagaatcctggtatgatgaacaagatgatgagtatgatgaaaggatct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 cagcgtatgagacagaatcctggtatgatgaacaagatgatgagtatgatgaaaggatct 1103
Query: 688 ggaggtggtatgccaaacatgcaagaatatcatgggaatgatgcaagatccaagtatgca 747
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1102 ggaggtggtatgccaaacatgcaag-atatcatgggaatgatgcaagatccaagtatgca 1044
Query: 748 agaaatggccaagcaattntctgggggaatgtagagcgttttcttcagaatgggctatta 807
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 agaaatggccaagcaattttctgggggaatgtagagcgttttcttcagaatgggctatta 984
Query: 808 taaaacgcaatcggcagatacttggatatttgtacatcttagtttagttacatacactct 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 taaaacgcaatcggcagatacttggatatttgtacatcttagtttagttacatacactct 924
Query: 868 tatttaccttcttcttcgttaatctgtaaattagaaatccacctctgtgat 918
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tatttaccttcttcttcgttaatctgtaaattagaaatccacctctgtgat 873
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7129
Number of Sequences: 1807
Number of extensions: 7129
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)