BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZH10RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig390                                                          878   0.0  

>3x_Contig390 
          Length = 1860

 Score =  878 bits (443), Expect = 0.0
 Identities = 605/651 (92%), Gaps = 6/651 (0%)
 Strand = Plus / Minus

                                                                        
Query: 61   atttatcgaacactcgtacatgtaccatctcacgagaacagaccacagacacaatttttc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 atttatcgaacactcgtacatgtaccatctcacgagaacagaccacagacacaatttttc 1587

                                                                        
Query: 121  gatttggaacctggtcttactcttagaatctgctggtattcatctttcccaatctatcga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 gatttggaacctggtcttactcttagaatctgctggtattcatctttcccaatctatcga 1527

                                                                        
Query: 181  actatctaagctggcattcgttcctcaattgacactatgtgcagtactaccttatctatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 actatctaagctggcattcgttcctcaattgacactatgtgcagtactaccttatctatt 1467

                                                                        
Query: 241  gtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaaacatacgcatt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 gtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaaacatacgcatt 1407

                                                                        
Query: 301  cgttactttcaataaagtatgcacttctcaatatttcatttggtatttggtattatcccc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 cgttactttcaataaagtatgcacttctcaatatttcatttggtatttggtattatcccc 1347

                                                                        
Query: 361  attttatttcgcatatacaaccattacatggagaaaaggtgtggtctgtatatttttatg 420
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 attttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgtatatttttatg 1287

                                                                        
Query: 421  gatattgtctcaagccgtatggcttttacaagcatatctacttgaattcaaa-gcccaaa 479
            |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 1286 gatattgtctcaagccgtatggctttcacaagcatatctacttgaattcaaaggccaaaa 1227

                                                                        
Query: 480  tgtattttttccccaacttattctttggccatatagaggttttcctcattaacgtctatt 539
            |||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||| 
Sbjct: 1226 tgta-tttttccccaacttattctttggcaatatagtgtttttcctcatcaacgtctatc 1168

                                                                        
Query: 540  tactcgggggcctttttacctgacatcaaattccaaacggtctttcccggacaattcact 599
            ||||| || | |||| |  ||||||||||| |||| |  ||| ||||  ||||||  || 
Sbjct: 1167 tactc-ggtgtctttatcactgacatcaaa-tccagaacgtcattccaagacaatcaaca 1110

                                                                        
Query: 600  ttagaagaattttttattttaactttaccatatcctggaaccgtactgggacctttttaa 659
            | |||||||| | | |||||||| ||| ||||| ||| | | |||||| ||| |||| ||
Sbjct: 1109 taagaagaatatataattttaac-ttagcatatactgtagc-gtactgtgacattttcaa 1052

                                                               
Query: 660  agcccccaacgaattcctgacaaatattttgatgttcccttccgttcatcc 710
            |||| | | |||| ||||||| | |||||||||||||| ||||||||||||
Sbjct: 1051 agccacgatcgaagtcctgacgagtattttgatgttccattccgttcatcc 1001


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9314
Number of Sequences: 1807
Number of extensions: 9314
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)