BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC8ZH10RM1.SCF screened BAC_end (925 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig390 878 0.0 >3x_Contig390 Length = 1860 Score = 878 bits (443), Expect = 0.0 Identities = 605/651 (92%), Gaps = 6/651 (0%) Strand = Plus / Minus Query: 61 atttatcgaacactcgtacatgtaccatctcacgagaacagaccacagacacaatttttc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1646 atttatcgaacactcgtacatgtaccatctcacgagaacagaccacagacacaatttttc 1587 Query: 121 gatttggaacctggtcttactcttagaatctgctggtattcatctttcccaatctatcga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1586 gatttggaacctggtcttactcttagaatctgctggtattcatctttcccaatctatcga 1527 Query: 181 actatctaagctggcattcgttcctcaattgacactatgtgcagtactaccttatctatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1526 actatctaagctggcattcgttcctcaattgacactatgtgcagtactaccttatctatt 1467 Query: 241 gtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaaacatacgcatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1466 gtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaaacatacgcatt 1407 Query: 301 cgttactttcaataaagtatgcacttctcaatatttcatttggtatttggtattatcccc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1406 cgttactttcaataaagtatgcacttctcaatatttcatttggtatttggtattatcccc 1347 Query: 361 attttatttcgcatatacaaccattacatggagaaaaggtgtggtctgtatatttttatg 420 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1346 attttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgtatatttttatg 1287 Query: 421 gatattgtctcaagccgtatggcttttacaagcatatctacttgaattcaaa-gcccaaa 479 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| Sbjct: 1286 gatattgtctcaagccgtatggctttcacaagcatatctacttgaattcaaaggccaaaa 1227 Query: 480 tgtattttttccccaacttattctttggccatatagaggttttcctcattaacgtctatt 539 |||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||| Sbjct: 1226 tgta-tttttccccaacttattctttggcaatatagtgtttttcctcatcaacgtctatc 1168 Query: 540 tactcgggggcctttttacctgacatcaaattccaaacggtctttcccggacaattcact 599 ||||| || | |||| | ||||||||||| |||| | ||| |||| |||||| || Sbjct: 1167 tactc-ggtgtctttatcactgacatcaaa-tccagaacgtcattccaagacaatcaaca 1110 Query: 600 ttagaagaattttttattttaactttaccatatcctggaaccgtactgggacctttttaa 659 | |||||||| | | |||||||| ||| ||||| ||| | | |||||| ||| |||| || Sbjct: 1109 taagaagaatatataattttaac-ttagcatatactgtagc-gtactgtgacattttcaa 1052 Query: 660 agcccccaacgaattcctgacaaatattttgatgttcccttccgttcatcc 710 |||| | | |||| ||||||| | |||||||||||||| |||||||||||| Sbjct: 1051 agccacgatcgaagtcctgacgagtattttgatgttccattccgttcatcc 1001 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9314 Number of Sequences: 1807 Number of extensions: 9314 Number of successful extensions: 111 Number of sequences better than 1.0e-20: 1 length of query: 925 length of database: 10,358,551 effective HSP length: 16 effective length of query: 909 effective length of database: 10,329,639 effective search space: 9389641851 effective search space used: 9389641851 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)