BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH11FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1600 0.0
>3x_Contig1709
Length = 16948
Score = 1600 bits (807), Expect = 0.0
Identities = 844/854 (98%), Gaps = 2/854 (0%)
Strand = Plus / Minus
Query: 86 ggccaatactgatgatattgataagaaaaaatcgacattagacattaaatatgaaaagat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 ggccaatactgatgatattgataagaaaaaatcgacattagacattaaatatgaaaagat 2405
Query: 146 gttaacagagttaaacaatgagatctcggccacgtccaggcaaataaaaacattacaaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 gttaacagagttaaacaatgagatctcggccacgtccaggcaaataaaaacattacaaaa 2345
Query: 206 tgtgattatagaacaagaggacgaaaataaaaaactcaaacagttaaaaaagcatatgga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 tgtgattatagaacaagaggacgaaaataaaaaactcaaacagttaaaaaagcatatgga 2285
Query: 266 taatgaaccaaacggttcaggaacgacccaggttcaatcagcagatggtacaacgatcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 taatgaaccaaacggttcaggaacgacccaggttcaatcagcagatggtacaacgatcaa 2225
Query: 326 ttggactcaagtgatgaaaagaattaatgattctactttatccaagtcagggttattgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 ttggactcaagtgatgaaaagaattaatgattctactttatccaagtcagggttattgtc 2165
Query: 386 ttcaagcggtgatgatctattgaatacgttaccgtcgcaatctcaactagtgcaaactat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2164 ttcaagcggtgatgatctattgaatacgttaccgtcgcaatctcaactagtgcaaactat 2105
Query: 446 cagatcggagattgacatggactctaaattggataatcaatggaaagcctctaaacattt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2104 cagatcggagattgacatggactctaaattggataatcaatggaaagcctctaaacattt 2045
Query: 506 gtttaacaaaagaattgaccaattggagaaagtatggaaagatatgcaggcggaaaatac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2044 gtttaacaaaagaattgaccaattggagaaagtatggaaagatatgcaggcggaaaatac 1985
Query: 566 acaacttaagaatgaacttacattacagacatactcgatgtctcaacaaccttcacaaca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1984 acaacttaagaatgaacttacattacagacatactcgatgtctcaacaaccttcacaaca 1925
Query: 626 cggtattaatggcgatcttgctggtcagaatcaaccccaagcgcatcaattacgcctgca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1924 cggtattaatggcgatcttgctggtcagaatcaaccccaagcgcatcaattacgcctgca 1865
Query: 686 tgatccttcctcctatacaaattataatacatctggatctttgctggcgcagaccgtcgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1864 tgatccttcctcctatacaaattataatacatctggatctttgctggcgcagaccgtcgc 1805
Query: 746 ttctgctccatttagctcttggctgcaac-aggacagcagcagcagcagcatattgacca 804
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1804 ttctgctccatttagctcttggctgcaacaaggacagcagcagcagcagcatattgacca 1745
Query: 805 taatcagattcctcactcacatgatcacgcccatagtcctnctttgtcaagtcatgaaac 864
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1744 taatcagattcctcactcacatgatcacgcccatagtcctcctttgtcaagtcatgaaac 1685
Query: 865 ttttacccac-atactgagtatgaaaattcctcgcatttgatctcagctcttgaaaactg 923
|||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 1684 tttttaccacaatactgagtatgaggattcctcgcatctgatctcagctcttgaaaacat 1625
Query: 924 ggtttctgatgttg 937
||||||||||||||
Sbjct: 1624 ggtttctgatgttg 1611
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7773
Number of Sequences: 1807
Number of extensions: 7773
Number of successful extensions: 221
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)