BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH11RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1539 1572 0.0
3x_Contig1332 244 3e-64
3x_Contig1694 238 2e-62
3x_Contig1743 236 6e-62
3x_Contig1005 236 6e-62
3x_Contig1765 232 1e-60
3x_Contig1772 228 2e-59
>3x_Contig1539
Length = 11016
Score = 1572 bits (793), Expect = 0.0
Identities = 827/837 (98%), Gaps = 1/837 (0%)
Strand = Plus / Minus
Query: 49 ataatgataaacgtatgaagaagcagatgtgtgaaccttcgaccaaaacaaagataaact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 ataatgataaacgtatgaagaagcagatgtgtgaaccttcgaccaaaacaaagataaact 2839
Query: 109 gccttagctgataattttatacatatatcaagtcaataattcaattctttttcaccgtaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 gccttagctgataattttatacatatatcaagtcaataattcaattctttttcaccgtaa 2779
Query: 169 agcggttgactcaaccatcatgacggtgacagaattggcaggaaatttatatcactttgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 agcggttgactcaaccatcatgacggtgacagaattggcaggaaatttatatcactttgt 2719
Query: 229 acgtctcattagagtaagttggaatttccgaatggcaggctattgcgataaagagtacgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 acgtctcattagagtaagttggaatttccgaatggcaggctattgcgataaagagtacgg 2659
Query: 289 ggtgtatgacacatactttcccttagtatcgatagatataagctgagcagtctgcaagag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2658 ggtgtatgacacatactttcccttagtatcgatagatataagctgagcagtctgcaagag 2599
Query: 349 gttctaatttgagacggaaactctgatactggataatgtccgaaacgcggttgcatacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2598 gttctaatttgagacggaaactctgatactggataatgtccgaaacgcggttgcatacct 2539
Query: 409 gacatttccactgaggtatagtcagcttaagcaatcattcgtacaattacaattaatatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2538 gacatttccactgaggtatagtcagcttaagcaatcattcgtacaattacaattaatatg 2479
Query: 469 gttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaaccttac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2478 gttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaaccttac 2419
Query: 529 agttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatttct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 agttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatttct 2359
Query: 589 tttttaattccctttgttaagataaatataatctgttacccggatccactcgtcttgatt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 tttttaattccctttgttaagataaatataatctgttacccggatccactcgtcttgatt 2299
Query: 649 gtatacgagattttcctcagagtatctggaggcttacctacgacaattaatatgggcatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2298 gtatacgagattttcctcagagtatctggaggcttacctacgacaattaatatgggcatc 2239
Query: 709 tacgtatgtatcttctctaaga-gtgaacctaaccaagcaaaagaagcaagaattatcaa 767
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 2238 tacgtatgtatcttctctaagaggtgaacctaaccaagcaaaggaagcaagaattatcaa 2179
Query: 768 tttaactatttcttcaggtcttttggatagtttttaaaggccgcactctcgtgtactgaa 827
||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 2178 tttaactatttcttcagttcttttgtatagtttttaaggtccgcactctcgtgtactgaa 2119
Query: 828 tagttattttgattcgaatcttctttttcgacaacaaaattaagatacctattcgca 884
||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 2118 tagttatattgatccgaatctcctttttcgacaacaaagttaagatacctattcgca 2062
>3x_Contig1332
Length = 6394
Score = 244 bits (123), Expect = 3e-64
Identities = 126/127 (99%)
Strand = Plus / Minus
Query: 467 tggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacctt 526
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1051 tggttgtgtggccgagcggtctaaggcgcctgattcaagatacctatcttaaccaacctt 992
Query: 527 acagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccattt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 acagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccattt 932
Query: 587 ctttttt 593
|||||||
Sbjct: 931 ctttttt 925
>3x_Contig1694
Length = 18020
Score = 238 bits (120), Expect = 2e-62
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 466 atggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3252 atggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacct 3193
Query: 526 tacagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3192 tacagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatt 3133
>3x_Contig1743
Length = 20172
Score = 236 bits (119), Expect = 6e-62
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 467 tggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5274 tggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacctt 5333
Query: 527 acagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatt 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5334 acagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatt 5392
>3x_Contig1005
Length = 3979
Score = 236 bits (119), Expect = 6e-62
Identities = 129/131 (98%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 464 atatggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaac 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atatggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaat 485
Query: 524 cttacagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaacca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttacagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaacca 545
Query: 584 tt-tctttttt 593
|| ||||||||
Sbjct: 546 ttatctttttt 556
>3x_Contig1765
Length = 24733
Score = 232 bits (117), Expect = 1e-60
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 465 tatggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacc 524
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1293 tatggttgtgtggccgagcggtctaaggcgcctgattcaagatacctatcttaaccaacc 1352
Query: 525 ttacagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1353 ttacagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccat 1412
Query: 585 t 585
|
Sbjct: 1413 t 1413
>3x_Contig1772
Length = 25851
Score = 228 bits (115), Expect = 2e-59
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 467 tggttgtgtggccgagcggtctaaggcgcctgattcaagataccaatcttaaccaacctt 526
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11557 tggttgtgtggccgagcggtctaaggcgcctgattcaagatacctatcttaaccaacctt 11498
Query: 527 acagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatt 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11497 acagttgggaacactcaggtatcgtaagatgcaagagttcgaatctcttcgcaaccatt 11439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6316
Number of Sequences: 1807
Number of extensions: 6316
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 7
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)