BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH12FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1509 0.0
>3x_Contig1608
Length = 13037
Score = 1509 bits (761), Expect = 0.0
Identities = 822/837 (98%), Gaps = 5/837 (0%)
Strand = Plus / Plus
Query: 85 tgagatgctgccaaatacccgactctcttttgctggaaattgttactgctcataacctcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6159 tgagatgctgccaaatacccgactctcttttgctggaaattgttactgctcataacctcc 6218
Query: 145 aaaacgtggaagttggcccacgccatatcaaaaccgtacatctccaaatatgttagtttc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219 aaaacgtggaagttggcccacgccatatcaaaaccgtacatctccaaatatgttagtttc 6278
Query: 205 aaaacagcattttttttcatgttaaaatctggagatttcacttcctccctgcattctaca 264
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6279 aaaacagcatttgtcttcatgttaaaatctggagatttcacttcctccctgcattctaca 6338
Query: 265 atggcttggtttaagaagtcttggagttgctcgggcgtctcgttgttagatctgatccct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6339 atggcttggtttaagaagtcttggagttgctcgggcgtctcgttgttagatctgatccct 6398
Query: 325 tttatcaaatcctttaaagatttctcaaaaaagatgccaaagggtcttagccgcttcttc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6399 tttatcaaatcctttaaagatttctcaaaaaagatgccaaagggtcttagccgcttcttc 6458
Query: 385 acgtcttcagcggatgtaccataaatactactcatatttctcgatacagcttgtactgtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6459 acgtcttcagcggatgtaccataaatactactcatatttctcgatacagcttgtactgtt 6518
Query: 445 aacaattgactaacggcctcgattgactcttttgctcacttgttaattgatcaagctttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6519 aacaattgactaacggcctcgattgactcttttgctcacttgttaattgatcaagctttc 6578
Query: 505 actttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttatttta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6579 actttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttatttta 6638
Query: 565 ctgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaactaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6639 ctgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaactaa 6698
Query: 625 agatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatttg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6699 agatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatttg 6758
Query: 685 gtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattatgc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6759 gtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattatgc 6818
Query: 745 tattccagaagcggattacctcccggcaggcattgacatagatagaaaacgtgtgtctga 804
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6819 tattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtctga 6878
Query: 805 atcagatgattcttncgatgatgatgctcaaatttcactatttccaacanaatccagtgg 864
|||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct: 6879 atcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt-g 6937
Query: 865 gtacgtttgtggaatgaacc-aatccaagatacncctttgttatgactcaagtnaat 920
||||| |||||| ||||||| |||||||||||| ||| |||| |||||||||| |||
Sbjct: 6938 gtacg-ttgtgg-atgaaccaaatccaagatacgcctatgtt-tgactcaagtaaat 6991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6425
Number of Sequences: 1807
Number of extensions: 6425
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)