BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH12RM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1346 0.0
>3x_Contig1641
Length = 13261
Score = 1346 bits (679), Expect = 0.0
Identities = 740/751 (98%), Gaps = 7/751 (0%)
Strand = Plus / Plus
Query: 45 gctttatgtaattgagact-caaccgagagaacgaagtcacgtgatggacatctggtgat 103
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6701 gctttatgtaattgagactacaaccgagagaacgaagtcacgtgatggacatctggtgat 6760
Query: 104 tccaacgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatccca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6761 tccaacgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatccca 6820
Query: 164 atttcaagctgtttagcagtccacagatagtatggattggataagtccccccaaatccag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6821 atttcaagctgtttagcagtccacagatagtatggattggataagtccccccaaatccag 6880
Query: 224 atgaaagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6881 atgaaagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttgg 6940
Query: 284 tgaaacctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaagg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6941 tgaaacctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaagg 7000
Query: 344 aagagttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttgga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7001 aagagttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttgga 7060
Query: 404 agaaggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 agaaggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttc 7120
Query: 464 aatacagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 aatacagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaag 7180
Query: 524 cctttttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7181 cctttttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaaca 7240
Query: 584 acattctggtagtgatgttttgactgcttttggg-tatgtgctatgcaaagatggcgtat 642
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 7241 acattctggtagtgatgttttgactgcttttgggttatgtgctatgcaaggatggcgtat 7300
Query: 643 gtctatggaagattctcacattgttgatttgaacatttctgatgatgagaatgagcattt 702
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7301 gtctatggaagattctcacattgttgatttgaacatttctgatgatgagaaggagcattt 7360
Query: 703 ggcgtactactgtgtgtttgacggacatggatggttcaagccgttgctcagttcctgagg 762
|||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||
Sbjct: 7361 ggcgtactactgtgtgtttgacggacatgg-tggttcaag-cgttgctcagtt-ctgtgg 7417
Query: 763 atccacagttctcccaaaattttacaaaaac 793
|| ||||||||| |||| |||||||||||||
Sbjct: 7418 at-cacagttct-ccaagattttacaaaaac 7446
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8403
Number of Sequences: 1807
Number of extensions: 8403
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)