BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA01RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1390 0.0
>3x_Contig1711
Length = 15491
Score = 1390 bits (701), Expect = 0.0
Identities = 791/812 (97%), Gaps = 7/812 (0%)
Strand = Plus / Plus
Query: 48 tagaggaagaagaagaaagattagaatctgaaggcttctatgaatccgacgaagaagaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3781 tagaggaagaagaagaaagattagaatctgaaggcttctatgaatccgacgaagaagaaa 3840
Query: 108 cttacgaaggatttgatgctgacgaaatctctgagatcagagaaaaggcagaatggatta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 cttacgaaggatttgatgctgacgaaatctctgagatcagagaaaaggcagaatggatta 3900
Query: 168 gagatagacaaaagaagatgatcaatgcttcaagaaacagaaaggcattgaagaaccgtg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 gagatagacaaaagaagatgatcaatgcttcaagaaacagaaaggcattgaagaaccgtg 3960
Query: 228 gtaccatgcctcgttctaaattggcaaagacatatggtgacatggagaagcacatgtctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 gtaccatgcctcgttctaaattggcaaagacatatggtgacatggagaagcacatgtctt 4020
Query: 288 ctttaggtcacgatatgactgctttgcaagataagcaaagagtcgctgctgaaaagaaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 ctttaggtcacgatatgactgctttgcaagataagcaaagagtcgctgctgaaaagaaca 4080
Query: 348 gatatgagcaaactggtgctgacgtggtatacggtgatcaagaagattctgctccagctg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4081 gatatgagcaaactggtgctgacgtggtatacggtgatcaagaagattctgctccagctg 4140
Query: 408 gtaagctaagacagacagatagattgacagacggtgttgctgatggttcaatgagatcga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4141 gtaagctaagacagacagatagattgacagacggtgttgctgatggttcaatgagatcga 4200
Query: 468 aggctgaaagaatggccaaattagaaagaagagaaagaaacagaatggccagagccggtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201 aggctgaaagaatggccaaattagaaagaagagaaagaaacagaatggccagagccggtg 4260
Query: 528 aatctgacagacatgctactgcctctctaccaaaacatttgttctcaggtaagcgtggtg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4261 aatctgacagacatgctactgcctctctaccaaaacatttgttctcaggtaagcgtggtg 4320
Query: 588 ttggtaagactgatttccgttaaactgtctgttcttccttcctttccatcactggtgatt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4321 ttggtaagactgatttccgttaaactgtctgttcttccttcctttccatcactggtgatt 4380
Query: 648 tcgaacatatattatcgtngtngccaatttcttttctatctctattgaactatatatata 707
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 4381 tcgaacatatattatcgt-gttgccaatttcttttctatctctattgaactatatatatt 4439
Query: 708 agtcactaccttcatttatttgtctgcattgggtggggtaaatttaatt-ttactccttt 766
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 4440 agtcactactttcatttatttgtctgcattgggtgggttaaatttaattattactccttt 4499
Query: 767 atttggaaaaaaagtaccgtactctggaaaattataagaatttatccctttgaattggct 826
|||| | |||| ||| ||||||||| ||||||||||| | |||| |||||| ||| |||
Sbjct: 4500 attt-gtaaaatagttacgtactctgtaaaattataag-agttatacctttg-atttgct 4556
Query: 827 tttcccttgaccaaaataaccaccattcctct 858
||| |||||||| ||||||||| ||| |||||
Sbjct: 4557 ttt-ccttgacc-aaataaccaacatccctct 4586
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,469
Number of Sequences: 1807
Number of extensions: 10469
Number of successful extensions: 105
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)