BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZA02FM1.SCF screened BAC_end (917 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1743 1588 0.0 >3x_Contig1743 Length = 20172 Score = 1588 bits (801), Expect = 0.0 Identities = 825/832 (99%), Gaps = 1/832 (0%) Strand = Plus / Minus Query: 87 taacgatgagcattatatagattgtatgatactaggtgtgtaaagccgccattcgaacca 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2007 taacgatgagcattatatagattgtatgatactaggtgtgtaaagccgccattcgaacca 1948 Query: 147 ttttttagagcttagttcccgggttttatgtcggaatacggaaatattccatacccaata 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1947 ttttttagagcttagttcccgggttttatgtcggaatacggaaatattccatacccaata 1888 Query: 207 aaagatcttttttttttcacgttatccgaggagacaaggccaacttatgataagttaaat 266 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1887 aaagatcttgatagcttcacgttatccgaggagacaaggccaacttatgataagttaaat 1828 Query: 267 acgcaacaggggaaggtaaaccttcaacacaatagcgctgggcaaatcaagtcggataaa 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1827 acgcaacaggggaaggtaaaccttcaacacaatagcgctgggcaaatcaagtcggataaa 1768 Query: 327 acactgccgaaactgagcaatttgaaagacaaattcaagataaggaataataaatatcta 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1767 acactgccgaaactgagcaatttgaaagacaaattcaagataaggaataataaatatcta 1708 Query: 387 cgaagtgcttcttcaccggagaaagaagaacgagataaacagcaaaatacaattgttata 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1707 cgaagtgcttcttcaccggagaaagaagaacgagataaacagcaaaatacaattgttata 1648 Query: 447 gtgactgatgatgaagaaccggagaaacaaactgtgcaacaagacatttaccaggagtat 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1647 gtgactgatgatgaagaaccggagaaacaaactgtgcaacaagacatttaccaggagtat 1588 Query: 507 ataccgagccgaattcataccaccgggcgcgaaagttccaagcacaggaaaattaagtta 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1587 ataccgagccgaattcataccaccgggcgcgaaagttccaagcacaggaaaattaagtta 1528 Query: 567 accaatcgaagatctgccaatcctcagagacaatctgaatcaatagggacaattgttact 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1527 accaatcgaagatctgccaatcctcagagacaatctgaatcaatagggacaattgttact 1468 Query: 627 caatcaactccaattccagtatcaagcaacatcgatcaaccttcgatattaaacacattt 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1467 caatcaactccaattccagtatcaagcaacatcgatcaaccttcgatattaaacacattt 1408 Query: 687 agtagcagtctcaaatctgtatttgattatgtggatactgtcattgatgtaaggttccca 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1407 agtagcagtctcaaatctgtatttgattatgtggatactgtcattgatgtaaggttccca 1348 Query: 747 ttgctgatatcatatcgaaggcacgtaaaaatcatgttaattgtaatatttatacttcag 806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1347 ttgctgatatcatatcgaaggcacgtaaaaatcatgttaattgtaatatttatacttcag 1288 Query: 807 gtcaactggtatatcgagctactcatcattttgattgcaagaagtgtatatcaatgacct 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1287 gtcaactggtatatcgagctactcatcattttgattgcaagaagtgtatatcaatgacct 1228 Query: 867 gtatatatatgtatgaactttntaaattt-aaggatgtgctgatatgcgtac 917 ||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct: 1227 gtatatatatgtatgaactttttaaatttaaaggatgtgctgatatgcgtac 1176 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7897 Number of Sequences: 1807 Number of extensions: 7897 Number of successful extensions: 59 Number of sequences better than 1.0e-20: 1 length of query: 917 length of database: 10,358,551 effective HSP length: 16 effective length of query: 901 effective length of database: 10,329,639 effective search space: 9307004739 effective search space used: 9307004739 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)