BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1647 0.0
>3x_Contig1487
Length = 9002
Score = 1647 bits (831), Expect = 0.0
Identities = 866/874 (99%), Gaps = 3/874 (0%)
Strand = Plus / Plus
Query: 46 aatacagtatcctcaggggtgttacaaaacagtttacaagcgttgagtactagatatgag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 aatacagtatcctcaggggtgttacaaaacagtttacaagcgttgagtactagatatgag 1644
Query: 106 gcgataattgacgatttggatgattcagataatataaagatcgagaagctatactcgtta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 gcgataattgacgatttggatgattcagataatataaagatcgagaagctatactcgtta 1704
Query: 166 ccgaaggtgtcaacacctattgacgttaatattcgaattcttaagaaggctacgaaaccc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 ccgaaggtgtcaacacctattgacgttaatattcgaattcttaagaaggctacgaaaccc 1764
Query: 226 tgcgaagagaaacctgaggaagagtccatattaaaggagtatacttccggggatattatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 tgcgaagagaaacctgaggaagagtccatattaaaggagtatacttccggggatattatc 1824
Query: 286 aacgggtttgttgttatagagaatagatctcaacatccccttcgattcgaaatgttttac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 aacgggtttgttgttatagagaatagatctcaacatccccttcgattcgaaatgttttac 1884
Query: 346 gttacgttggaaggttgtgcatgtgtcattgataaaaaacaaggtaaacgtactgtaaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 gttacgttggaaggttgtgcatgtgtcattgataaaaaacaaggtaaacgtactgtaaag 1944
Query: 406 agattccttagaatggtggatttatctgcaagttggtcttattcgaatattgatcttgcc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 agattccttagaatggtggatttatctgcaagttggtcttattcgaatattgatcttgcc 2004
Query: 466 acggggttccagtatgttccaggagatatcgatcaggatggatgtgtcttgggattaaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acggggttccagtatgttccaggagatatcgatcaggatggatgtgtcttgggattaaac 2064
Query: 526 aacgacagattcttgcagcctggcgtccgttataaaaaattcttcacatttaagttccca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 aacgacagattcttgcagcctggcgtccgttataaaaaattcttcacatttaagttccca 2124
Query: 586 aatcaattacttgatatttcatgcaagcatgagatgttctgccattgtcttttgccgcct 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 aatcaattacttgatatttcatgcaagcatgagatgttctgccattgtcttttgccgcct 2184
Query: 646 agcttcggggtggacaagtataagcatcacgctcgctattcaaatattaagttgaattct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 agcttcggggtggacaagtataagcatcacgctcgctattcaaatattaagttgaattct 2244
Query: 706 atgcttggatatggtcacttgggcactaaaggatcaccaattntgactaatgatttatgc 765
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2245 atgcttggatatggtcacttgggcactaaaggatcaccaattttgactaatgatttatgc 2304
Query: 766 agcgataatctatcggtgagttacaccattgacgcacgagtcgttgggaaagatgccata 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2305 agcgataatctatcggtgagttacaccattgacgcacgagtcgttgggaaagatgccaaa 2364
Query: 826 cgt-atgaattgac-ataatggaagaaaaag-atatattctaaggcttattccattcgga 882
||| |||||||||| |||||| | ||||||| ||||| ||||||||||||||||||||||
Sbjct: 2365 cgtaatgaattgacaataatgaaggaaaaagaatataatctaaggcttattccattcgga 2424
Query: 883 ttttgccaaccgttaacaggtgaaggtgatccac 916
||||||||||||||||||||||||||||||||||
Sbjct: 2425 ttttgccaaccgttaacaggtgaaggtgatccac 2458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5724
Number of Sequences: 1807
Number of extensions: 5724
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)