BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA03FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig648 1229 0.0
3x_Contig1659 145 2e-34
>3x_Contig648
Length = 1819
Score = 1229 bits (620), Expect = 0.0
Identities = 660/671 (98%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 93 ttttacatgcaagtttgtttactagccgtatgtgatgggcatcgtacaatgaatttcgac 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 ttttacatgcaagtttgtttactagccgtatgtgatgggcatcgtacaatgaatttcgac 1168
Query: 153 cattttatataggccgaaaggttttaaaaaaaaagttttagcaaccaagtaatgagtttg 212
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1169 cattttatataggccgaaagggaaaaaaaaaaaagttttagcaaccaagtaatgagtttg 1228
Query: 213 gagatctacn-atttcctttggagttccatatagctccgaatcgacaaaatctgcatatt 271
||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 gagatctacatagttccgttggagttccatatagctccgaatcgacaaaatctgcatatt 1288
Query: 272 ttgctgctgcagatactgcaaggtatatgtgcttttactagcatcgctttcctgttttca 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 ttgctgctgcagatactgcaaggtatatgtgcttttactagcatcgctttcctgttttca 1348
Query: 332 gttggatatcatgcgctgagtcacaattctttgtctggctgttactaagaagatgcggcc 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gttggatatcatgcgctgagtcacaattctttgtctggctgttactaagaagatgcggcc 1408
Query: 392 gaatgcgtcataagcggcaacaaactggtatgagtcaaaagaagtagttaagataagcat 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 gaatgcgtcataagcggcaacaaactggtatgagtcaaaagaagtagttaagataagcat 1468
Query: 452 gtatgtgtatttcataacgtcaaaaataaataaataagttattagaggtgggttaacatc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 gtatgtgtatttcataacgtcaaaaataaataaataagttattagaggtgggttaacatc 1528
Query: 512 ctgcataaagtgtgtaatgtcatctttttcgtgtttttggtgaagttcgatggtatagct 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 ctgcataaagtgtgtaatgtcatctttttcgtgtttttggtgaagttcgatggtatagct 1588
Query: 572 cggataagccgatactaagggaaagaaaaagaaagagatagagagataatacgaatgata 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 cggataagccgatactaagggaaagaaaaagaaagagatagagagataatacgaatgata 1648
Query: 632 tgatactttatgatatgaaaaaaaaatgataatgttgagatagacagggtgaataataat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 tgatactttatgatatgaaaaaaaaatgataatgttgagatagacagggtgaataataat 1708
Query: 692 aaaatgaagaatgtgtgttggtattttttttttcgttaaa-ggtttttatggttttggtt 750
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1709 aaaatgaagaatgtgtgttggtattttttttttcgttaaagggtttttatggttttggtt 1768
Query: 751 tttctagtata 761
|| ||| ||||
Sbjct: 1769 ttcctattata 1779
>3x_Contig1659
Length = 17570
Score = 145 bits (73), Expect = 2e-34
Identities = 125/137 (91%), Gaps = 4/137 (2%)
Strand = Plus / Plus
Query: 803 atttgatgatatcaaatctttgaaatcttagggaa-atttgaatggtctttaagagc-ga 860
|||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||
Sbjct: 2 atttgatgatatcaaatctttgaagtcttagggaatatttgaatggtctctaagagcaga 61
Query: 861 tgtgaaagtgcaaaaaacaatggat-aaagaagagtt-gaaataattatttggggggggt 918
|||||||||||||||||| |||||| ||||||||||| ||||||| || | ||||||||
Sbjct: 62 tgtgaaagtgcaaaaaacgatggataaaagaagagttagaaataaataatatgggggggt 121
Query: 919 tgtaagtgggagaggaa 935
|||||||||||| ||||
Sbjct: 122 tgtaagtgggaggggaa 138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,617
Number of Sequences: 1807
Number of extensions: 10617
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)