BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA03RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1120 0.0
>3x_Contig1774
Length = 27771
Score = 1120 bits (565), Expect = 0.0
Identities = 672/700 (96%), Gaps = 6/700 (0%)
Strand = Plus / Minus
Query: 48 cttcgaatagtaatactaatccgttaattcgaatttcaaccgatgccaagcctaacgttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 cttcgaatagtaatactaatccgttaattcgaatttcaaccgatgccaagcctaacgttg 6029
Query: 108 ccttggcagatcacgaaaaggacaaaaacgtgccgttgcaaacaaggttagcacaaagcg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6028 ccttggcagatcacgaaaaggacaaaaacgtgccgttgcaaacaaggttagcacaaagcg 5969
Query: 168 gtctggaaaaggtgacctggtatgggaccactttctaacaacgataccgttgccgaatcg 227
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5968 gtctggaaaaggtgacctggtatgggacca-tttctaacaacgataccgttgccgaatcg 5910
Query: 228 ttcgaatcaacttgtgagagttgttattacgcgttcattttagacaatactacttcgaag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5909 ttcgaatcaacttgtgagagttgttattacgcgttcattttagacaatactacttcgaag 5850
Query: 288 cagactaagaaaaaatgtttattttcggtgagtatcaaccctagtgcatcggcaatggaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5849 cagactaagaaaaaatgtttattttcggtgagtatcaaccctagtgcatcggcaatggaa 5790
Query: 348 ggtttggatgacgatcaggaatccgtcatttcaaaccaagaggaaagctttggtgccaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5789 ggtttggatgacgatcaggaatccgtcatttcaaaccaagaggaaagctttggtgccaat 5730
Query: 408 gggacgaatggcaagcgacctttgaattatagccaaacgtcattcaaggatccatctttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5729 gggacgaatggcaagcgacctttgaattatagccaaacgtcattcaaggatccatctttg 5670
Query: 468 tgctcattagcaaaatcgaattccaatccatttgcgccatctccatgccagactactcca 527
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5669 tcctcattagcaaaatcgaattccaatccatttgcgccatctccaggccagactactcca 5610
Query: 528 agcacaatttgcaacgtgggtacatctaacanaccaaacactaattctccagtgccaata 587
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5609 agcacaatttccaacgtgggtacatctaacggaccaaacactaattctccagtgccaata 5550
Query: 588 aaatcactgagttcaatttttacatccgcgacagatcacgatttgataaacattaaa-ga 646
||| |||||||| ||| || |||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 5549 aaaccactgagtccaagttctacatccgcgacagatcacgatttgaaaaacagtaaagga 5490
Query: 647 ttcc-aggatatttactaaaaaagtataaaaagaagctccaa-gttttacaaaac-gttc 703
|||| ||||||||||||||||||| | | ||||||||| ||| ||||||| |||| ||||
Sbjct: 5489 ttccaaggatatttactaaaaaagaagagaaagaagctacaaggttttaccaaacggttc 5430
Query: 704 ttttaacccgattttaaattggggaattccctcatattat 743
||| ||| |||| | ||||| ||| |||| ||||||||||
Sbjct: 5429 tttaaactcgatataaaatttggg-attctctcatattat 5391
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6592
Number of Sequences: 1807
Number of extensions: 6592
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)