BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA04FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig519 825 0.0
3x_Contig791 733 0.0
>3x_Contig519
Length = 1492
Score = 825 bits (416), Expect = 0.0
Identities = 438/443 (98%), Gaps = 2/443 (0%)
Strand = Plus / Minus
Query: 451 tttgatagagtagtaaaggtcctgaattaattgctgagaatacgcactgccagcagatgc 510
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1490 tttgatagagtagtaaaggcccggaattaattgctgagaatacgcactgccagcagatgc 1431
Query: 511 aggaagcatgtgtagtacacatgtgccaaatttttggtccattattgttttttccgttac 570
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1430 aggaagcatgtgtagtacacatgtgccaaatttttggtccattattgttttt-ccgttac 1372
Query: 571 cccacagtagagataggggaagaggctctttttcacatcttttacctttcactttagcgc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 cccacagtagagataggggaagaggctctttttcacatcttttacctttcactttagcgc 1312
Query: 631 acaaatcgttcttgtttgttgatattttcacaaaacaatatcgatctactgttgttgtat 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 acaaatcgttcttgtttgttgatattttcacaaaacaatatcgatctactgttgttgtat 1252
Query: 691 ccaatgatgtaaacataaagtgaaaaaggttgtgaaatagtcacgtgattgactttggtg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 ccaatgatgtaaacataaagtgaaaaaggttgtgaaatagtcacgtgattgactttggtg 1192
Query: 751 accatcacaaggattgaaggaaagacatatgcagacatacatgtatacataatatatata 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 accatcacaaggattgaaggaaagacatatgcagacatacatgtatacataatatatata 1132
Query: 811 tcaatacagtacatgtataatacatttgtttaacttattattatgccatattttttaat- 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 tcaatacagtacatgtataatacatttgtttaacttattattatgccatattttttaata 1072
Query: 870 aggagcaganagtagttcagcct 892
||||||||| |||||||||||||
Sbjct: 1071 aggagcagagagtagttcagcct 1049
>3x_Contig791
Length = 3989
Score = 733 bits (370), Expect = 0.0
Identities = 377/378 (99%), Gaps = 1/378 (0%)
Strand = Plus / Plus
Query: 86 tgtaatgtagcatcagatgaactatgttgccaagcatttcccccataggacccaattgac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 tgtaatgtagcatcagatgaactatgttgccaagcatttcccccataggacccaattgac 3672
Query: 146 cttctgtccgataccttctcaaaattctcaaaagaatccgcatagacgctttccgttgtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3673 cttctgtccgataccttctcaaaattctcaaaagaatccgcatagacgctttccgttgtt 3732
Query: 206 ttcctttgtatattttctatcacttctttcgacattggttctctcatatcatacaactca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3733 ttcctttgtatattttctatcacttctttcgacattggttctctcatatcatacaactca 3792
Query: 266 tcgtttttgtctaaaagtgacaaacattgcagtaaatatttatgtttttcttccggactt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793 tcgtttttgtctaaaagtgacaaacattgcagtaaatatttatgtttttcttccggactt 3852
Query: 326 gagagatggcacatgatgccggcaaacatttctaaatgagaccaacttttcatgtcctga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 gagagatggcacatgatgccggcaaacatttctaaatgagaccaacttttcatgtcctga 3912
Query: 386 ttgcgttgcaccattatttttttataatattccaatacttttgtgacattttcctttgat 445
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 ttgcg-tgcaccattatttttttataatattccaatacttttgtgacattttcctttgat 3971
Query: 446 gatgttttgatagagtag 463
||||||||||||||||||
Sbjct: 3972 gatgttttgatagagtag 3989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8133
Number of Sequences: 1807
Number of extensions: 8133
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 2
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)