BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA04RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig89 1043 0.0
3x_Contig955 131 3e-30
>3x_Contig89
Length = 784
Score = 1043 bits (526), Expect = 0.0
Identities = 579/597 (96%)
Strand = Plus / Plus
Query: 46 gcttccaattagagaaatgttacaagttgtacgcaagaagcctacaggatccgcatgatg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gcttccaattagagaaatgttacaagttgtacgcaagaagcctacaggatccgcatgatg 125
Query: 106 ctggtaaatcctggcaaataactgataaatctggtatgtcacctttactgctattgcaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctggtaaatcctggcaaataactgataaatctggtatgtcacctttactgctattgcaat 185
Query: 166 cgatggttatgaataaggcagggtataagaggaaactactcaataaggatgtcaagagtg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgatggttatgaataaggcagggtataagaggaaactactcaataaggatgtcaagagtg 245
Query: 226 gaaaatcctactccagatgtttcaattttggttccaatgtcaacatgcagttaggtaccg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaaaatcctactccagatgtttcaattttggttccaatgtcaacatgcagttaggtaccg 305
Query: 286 gtgataataatgatagattaacctcatggtatgaaattgattcttggaagatgtgtgata 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtgataataatgatagattaacctcatggtatgaaattgattcttggaagatgtgtgata 365
Query: 346 atgatctaagatttaaatcatgctgtatgaccaaatactactctctgttattgatggtag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgatctaagatttaaatcatgctgtatgaccaaatactactctctgttattgatggtag 425
Query: 406 acaaggatggaacaaattcagcatacatcactggccgttctacgaaattaaatttgtttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acaaggatggaacaaattcagcatacatcactggccgttctacgaaattaaatttgtttg 485
Query: 466 gaaaaagagatctcttcaggtatgtaaaattctctgacaagaaattacaagatatcaagt 525
|||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||||||| |
Sbjct: 486 gaaaaagagatctcttcatgtatgtaaaatgctcttacaataaattacaatatatcaatt 545
Query: 526 gctccaatcatcatataattgccaaaacaaccaatggaaatatactnttatgggggtcca 585
||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| |
Sbjct: 546 tctccaatcatcatattatttccaaaacaaccaatggaaatatacttttatgggggtaaa 605
Query: 586 ataaatatggtcaattgggtttaaaccctaaaaccaccgagttttcagatcaaccca 642
||||||||||| |||||||||||||||| ||||||||| | ||||| |||||||||
Sbjct: 606 ataaatatggtaaattgggtttaaacccgaaaaccacctatgtttcatatcaaccca 662
>3x_Contig955
Length = 4159
Score = 131 bits (66), Expect = 3e-30
Identities = 134/153 (87%), Gaps = 3/153 (1%)
Strand = Plus / Minus
Query: 694 cacacatgcgtgctatcaaaatctggttc-atcaaatcttggggattagaccgtggtc-a 751
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct: 4132 cacacatgcgtgctatcaaaatctggttcaatcaaatcttggggattagacgttggtcaa 4073
Query: 752 ttttgatctactagntaattcaaaaaagagacccctttttttgaatcaaaaggaacaatt 811
||| |||||||||| ||||||||||||||||||||| | | || ||||||| ||||
Sbjct: 4072 tttggatctactagtaaattcaaaaaagagaccccttatctcgatcaaaaaggacaaatt 4013
Query: 812 tcgcc-ccaccagtaaccttgtttttaccagct 843
||||| | |||||| |||| |||||||||||||
Sbjct: 4012 tcgccacaaccagttacctcgtttttaccagct 3980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7435
Number of Sequences: 1807
Number of extensions: 7435
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)