BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZA07FM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1196                                                        1005   0.0  

>3x_Contig1196 
          Length = 5660

 Score = 1005 bits (507), Expect = 0.0
 Identities = 586/609 (96%), Gaps = 3/609 (0%)
 Strand = Plus / Minus

                                                                        
Query: 297  atttatgtttttttggaacatctctacctttaacgtaattccagttaaaacagtcatgac 356
            |||||| |||||||  |||||| ||||||||||| |||||||| |||| ||| |||| ||
Sbjct: 5592 atttatttttttttttaacatcactacctttaacttaattccatttaatacattcattac 5533

                                                                        
Query: 357  atgcgtccggtgttttgcatttagctacagtatcgtaatccgtcaatataccatctataa 416
            || | |||  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5532 attcttccttttttttgcatttagctacagtatcgtaatccgtcaatataccatctataa 5473

                                                                        
Query: 417  ctgtgtgtattctgtgattaagcatgtttacatgccaacctttgtcggttacaacgtcgt 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5472 ctgtgtgtattctgtgattaagcatgtttacatgccaacctttgtcggttacaacgtcgt 5413

                                                                        
Query: 477  aaacacaaacttttcctgaatggcaactagtttccatagcatatccagctattgaacatg 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5412 aaacacaaacttttcctgaatggcaactagtttccatagcatatccagctattgaacatg 5353

                                                                        
Query: 537  acgaacttgctccgttacaagttcccatgaaaattggatctgctgtgtgcccaatgtgcc 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 acgaacttgctccgttacaagttcccatgaaaattggatctgctgtgtgcccaatgtgcc 5293

                                                                        
Query: 597  aaactccctcttgataggcaggtaatccaggaggcataggtaaatgtaagcgttntgttg 656
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5292 aaactccctcttgataggcaggtaatccaggaggcataggtaaatgtaagcgttttgttg 5233

                                                                        
Query: 657  ctagcaactcaccaggagcctcgaaagcaaccgctggtgcaccaaatgttcgtcccaaca 716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5232 ctagcaactcaccaggagcctcgaaagcaaccgctggtgcaccaaatgttcgtcccaaca 5173

                                                                        
Query: 717  aactcgctaatgcgccccccagggaatgacctgtgatccagattgccgaattcggatgag 776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5172 aactcgctaatgcgccccccagggaatgacctgtgatccagattgccgaattcggatgag 5113

                                                                        
Query: 777  ctgtcacaacgctacgataaatatctagcacggctttgatattatcgatctttccttaca 836
            |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 5112 ctgtcacaacgctacgataaatatctagcacggc-ttgataatatcgatctttccttaca 5054

                                                                        
Query: 837  agctnctgttccaaacatttttcatcacatgtttacgattttcacataacaagtaacaag 896
            |||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||
Sbjct: 5053 agctcctgttccaaacatttttcatcacatgtatacga-tttcacataac-agtcacaag 4996

                     
Query: 897  ctggtttcc 905
            ||| |||||
Sbjct: 4995 ctgttttcc 4987


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5004
Number of Sequences: 1807
Number of extensions: 5004
Number of successful extensions: 20
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)