BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA08FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1481 0.0
>3x_Contig1605
Length = 12373
Score = 1481 bits (747), Expect = 0.0
Identities = 807/825 (97%), Gaps = 4/825 (0%)
Strand = Plus / Plus
Query: 89 cgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcctgga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9342 cgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcctgga 9401
Query: 149 atcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgtcct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402 atcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgtcct 9461
Query: 209 tccaaaatattttcaactaaaataaatgaacctgcctctaagttggaaaacacttcaacc 268
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9462 tccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttcaacc 9521
Query: 269 gtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcgttg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9522 gtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcgttg 9581
Query: 329 cgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaagaact 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9582 cgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaagaact 9641
Query: 389 ttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgctaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9642 ttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgctaaa 9701
Query: 449 cttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaagcgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702 cttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaagcgt 9761
Query: 509 ttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagcgat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9762 ttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagcgat 9821
Query: 569 attcaagagttcgaagactatattggacttttgacgcacaccaaattccatcacaaaggg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9822 attcaagagttcgaagactatattggacttttgacgcacaccaaattccatcacaaaggg 9881
Query: 629 tcatctttacaagacggaataataccgaaacttcttaagaatttgctacatccttctaat 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9882 tcatctttacaagacggaataataccgaaacttcttaagaatttgctacatccttctaat 9941
Query: 689 ttacgaattgcgccattgaaaacggcttcagtgttcaacgatgtaatatactactacgga 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9942 ttacgaattgcgccattgaaaacggcttcagtgttcaacgatgtaatatactactacgga 10001
Query: 749 aacaagaacnaatttgccacctgcagagagctttatgcacaaatgaaatccgaaggtatc 808
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10002 aacaagaacaattttgccacctgcagagagctttatgcacaaatgaaatccgaaggtatc 10061
Query: 809 gcaccaaacgtncaaacttat-atttaatgnntagggaccttctcaggaactccagttta 867
||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||| |||
Sbjct: 10062 gcaccaaacgtccaaacttataatttaatgttaaggaaccttctcaggaactccaggtta 10121
Query: 868 attaaaca--cactnccatatcgcgaagc-atattttatctggaa 909
|||||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 10122 attaaacaacaactcccatatcgcgaagcaatattttatctggaa 10166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6059
Number of Sequences: 1807
Number of extensions: 6059
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)