BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA08RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1300 0.0
>3x_Contig1696
Length = 16725
Score = 1300 bits (656), Expect = 0.0
Identities = 707/720 (98%), Gaps = 3/720 (0%)
Strand = Plus / Minus
Query: 48 ttgacgtactctttcc-gtcacttctgctagaattttactgcgcaaagcagccatataat 106
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050 ttgacgtactctttccagtcacttctgctagaattttactgcgcaaagcagccatataat 9991
Query: 107 cctggcctgacattttgactgtttactgctaatgttgacagttgagtcaaattttagaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9990 cctggcctgacattttgactgtttactgctaatgttgacagttgagtcaaattttagaaa 9931
Query: 167 ggaggacgttcgaaagcccggtatttcaagagaaatgttacatgtttctattgaaactga 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9930 ggaggacgttcgaaagcccggtatttcaagagaaatgttacatgtttctaatgaaactga 9871
Query: 227 tcccagcacattgtaagttgtttgaacttcaaatactttcgatgggaatttcatcctggt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9870 tcccagcacattgtaagttgtttgaacttcaaatactttcgatgggaatttcatcctggt 9811
Query: 287 gaaaaaatgtcaaaatcacgtgatagattctggtattacgtgtcaaaagttacatcgaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9810 gaaaaaatgtcaaaatcacgtgatagattctggtattacgtgtcaaaagttacatcgaat 9751
Query: 347 tgcatagaaataactactttaactgctgtgataaagacctacctcttttaagacgctcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9750 tgcatagaaataactactttaactgctgtgataaagacctacctcttttaagacgctcac 9691
Query: 407 ctttacaatattttataattcatattgaatcaaataccaggcaaaaataaaggagaagga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690 ctttacaatattttataattcatattgaatcaaataccaggcaaaaataaaggagaagga 9631
Query: 467 acagctatgcgaatagtgttttggtttttgttggcaatacagtctctaaccacctgtttt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9630 acagctatgcgaatagtgttttggtttttgttggcaatacagtctctaaccacctgtttt 9571
Query: 527 gcggcggtcgttggtttagatttcggtacgcactatgtaaaagagatggtggtctctttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9570 gcggcggtcgttggtttagatttcggtacgcactatgtaaaagagatggtggtctctttg 9511
Query: 587 aaagccccgttagagatcgtattgaatcctgaatctaagagaaa-gatgctagtgcgtta 645
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9510 aaggccccgttagagatcgtattgaatcctgaatctaagagaaaggatgctagtgcgtta 9451
Query: 646 gcaattagatcatgggatagtcagaactatttggaaaggttttattgaaattctgcggta 705
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 9450 gcaattagatcatgggatagtcagaactatttggaaaggttttatggaagttctgcggta 9391
Query: 706 gccttggcaacttgatt-ccattaaacacatttatgcccttgaaaagtctatttgggaaa 764
|||||||||||| |||| |||| || |||||||||| ||||||||||||||| ||||||
Sbjct: 9390 gccttggcaactcgattcccatcaacaacatttatgcacttgaaaagtctattggggaaa 9331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7583
Number of Sequences: 1807
Number of extensions: 7583
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)