BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA09FM1.SCF screened BAC_end
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 149 1e-35
>3x_Contig1666
Length = 16162
Score = 149 bits (75), Expect = 1e-35
Identities = 172/198 (86%), Gaps = 5/198 (2%)
Strand = Plus / Plus
Query: 227 gatatctttgctgagggagtggctttcatctagtaacagcaaacacatcaatgcaagatg 286
||||| |||| ||||||||||| ||| || |||||| || ||| |||| |||||||||||
Sbjct: 121 gatatatttgatgagggagtggatttaatatagtaaaagaaaaaacataaatgcaagatg 180
Query: 287 tacancctgaaacaccaaatgggtcgacaaaaactttgacttctcaaaaagacaatttac 346
|||| | ||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 181 tacacctgaaaacaccaaatggtcggacaaaaacttgaacttctcaaaaggacaatttac 240
Query: 347 atta-cagtcaatcct-agtgtgcatgctccagtataaaaga-cacttgggctgg-gata 402
| || ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 241 aatagcagtcaatcctaagtgtgcatgctccagtataaaagagcacttgggctggtaata 300
Query: 403 ttggatgcaacaactttc 420
|| |||||||||||||||
Sbjct: 301 tt-gatgcaacaactttc 317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,809
Number of Sequences: 1807
Number of extensions: 14809
Number of successful extensions: 285
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)