BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA09RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 1164 0.0
>3x_Contig1449
Length = 7865
Score = 1164 bits (587), Expect = 0.0
Identities = 664/683 (97%), Gaps = 5/683 (0%)
Strand = Plus / Plus
Query: 48 tggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6743 tggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatg 6802
Query: 108 ggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6803 ggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaa 6862
Query: 168 catacagttcggatttggacatggttgtcccctcaaatacgaggagcattactttgttgt 227
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6863 catacagttcggatttggacatggttgtcccctcaaatacgaggagcagtactttgttgt 6922
Query: 228 accatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaataca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6923 accatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaataca 6982
Query: 288 ttttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6983 ttttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatg 7042
Query: 348 actcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7043 actcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatctt 7102
Query: 408 gttaatttttccatactggccaaaatacttgtccgatctcaagatggatggaagttcttc 467
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103 gttaattttttcatactggccaaaatacttgtccgatctcaagatggatggaagttcttc 7162
Query: 468 gtaagggtaatgtggattcaacccaataacgtaaaccatattcttctgaatgaccctcat 527
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7163 gtaagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccctcat 7222
Query: 528 accagcaagctgtttcctattatgagtgtcatttttctctacgttcacgct-cctttgct 586
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 7223 accagcaagctgtttcctattatgagtgtca-ttttctctacgttcacgctccctttgct 7281
Query: 587 tacgatcacgttcttttctgggctgcctgggacgttccattttcaact-ttctggggaaa 645
||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||||
Sbjct: 7282 tacgatcacgttcttttctggcctgcttggaacgttccattttcaactcttctggagaaa 7341
Query: 646 agacgatgtactcgacgc-ttcatcgtcgtactttcgacgacaagccgaacattgaacat 704
|||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct: 7342 gaacgatgtactcgacgctttcatcgtcgtactttcgacgacaagccggacatcgaccat 7401
Query: 705 taagctcaagaattttgacgaat 727
||||||| || ||||||||||||
Sbjct: 7402 taagctc-aggattttgacgaat 7423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6343
Number of Sequences: 1807
Number of extensions: 6343
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)