BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA10FM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig226 1400 0.0
>3x_Contig226
Length = 1863
Score = 1400 bits (706), Expect = 0.0
Identities = 784/803 (97%), Gaps = 6/803 (0%)
Strand = Plus / Plus
Query: 89 atttgtctatcttgatggacagaaagactaagaagccattgatcatttgctctagtgaag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atttgtctatcttgatggacagaaagactaagaagccattgatcatttgctctagtgaag 589
Query: 149 gtggtatgaatatcgaagatgtggcaaagaccaacccagatgctatcaagaagttctacg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtggtatgaatatcgaagatgtggcaaagaccaacccagatgctatcaagaagttctacg 649
Query: 209 tcgaagatttcttttggattgaccccagaaactgctgctgagattgctgcctccttgggt 268
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcgaagattccgtt-ggattgaccccagaaactgctgctgagattgctgcctccttgggt 708
Query: 269 ttctccaaggaagccgaagctgatgctaaggatgcagtcttgaagttatataagatcttc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttctccaaggaagccgaagctgatgctaaggatgcagtcttgaagttatataagatcttc 768
Query: 329 aaggaaaaggatgctactcaaatcgaaattaacccattgagtgaagttcttgaccaggat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aaggaaaaggatgctactcaaatcgaaattaacccattgagtgaagttcttgaccaggat 828
Query: 389 aagaaggtcatgtgtatggatgccaagttcggtttcgatgacaatgcctccttcagacaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aagaaggtcatgtgtatggatgccaagttcggtttcgatgacaatgcctccttcagacaa 888
Query: 449 aaagacgtgtactcatggagagatttgactcaagaagatccagatgaagttaccgccaag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aaagacgtgtactcatggagagatttgactcaagaagatccagatgaagttaccgccaag 948
Query: 509 aagagtgacttgaactttgtcaagttaaagggtaatatcggttgtttggtcaacggtgcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 aagagtgacttgaactttgtcaagttaaagggtaatatcggttgtttggtcaacggtgcc 1008
Query: 569 ggtttagccatggccaccatggatgtcattaagttatatggtggtgatccagctaacttc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ggtttagccatggccaccatggatgtcattaagttatatggtggtgatccagctaacttc 1068
Query: 629 ttggattgtggtggtggtgccactccggaaactatcgaaactgctttcaagttgatcttg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 ttggattgtggtggtggtgccactccggaaactatcgaaactgctttcaagttgatcttg 1128
Query: 689 tccaacgataacgtcgatgccatctttcgtt-acattttcggnggtattgtcagatgtga 747
|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 1129 tccaacgataacgtcgatgccatc-ttcgttaacattttcggtggtattgtcagatgtga 1187
Query: 748 tttcgtcgctcaa-gtctagtcgctgctaccaagaacttgtctgtcaa-gtcccaattgn 805
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1188 tttcgtcgctcaaggtctagtcgctgctaccaagaacttgtctgtcaaggtcccaattgt 1247
Query: 806 tgcttgnctacaaggtaccaacttgtaacaaggtaaacgaaatatcgcttgatccggttt 865
|||| | |||||||||||||||||| ||||||||| ||||| ||||||| |||||||||
Sbjct: 1248 tgctcgtctacaaggtaccaacttggaacaaggtagacgaattatcgctgaatccggttt 1307
Query: 866 gaaaat-tattcctttgacgaat 887
||| || |||||||| |||||||
Sbjct: 1308 gaagatctattccttcgacgaat 1330
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5812
Number of Sequences: 1807
Number of extensions: 5812
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)