BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZA10RM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1801                                                        1334   0.0  

>3x_Contig1801 
          Length = 57606

 Score = 1334 bits (673), Expect = 0.0
 Identities = 812/841 (96%), Gaps = 13/841 (1%)
 Strand = Plus / Minus

                                                                         
Query: 48    ttatcgaatctggataatgagaacggtgacgcggacgatgcagatctatttgaggaagaa 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50434 ttatcgaatctggataatgagaacggtgacgcggacgatgcagatctatttgaggaagaa 50375

                                                                         
Query: 108   cccgaggaacaaaaccctgctaatgaagcatccgaatctgatttgttgaaatccccatct 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50374 cccgaggaacaaaaccctgctaatgaagcatccgaatctgatttgttgaaatccccatct 50315

                                                                         
Query: 168   aaagaagacgatactaccgcagcaggtaatgaggaacaagaacaagaacaagaacaagaa 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50314 aaagaagacgatactaccgcagcaggtaatgaggaacaagaacaagaacaagaacaagaa 50255

                                                                         
Query: 228   caggacgaacaaatggataaagagaatgacgaaatcgcgttgccagaaactaaaaaggaa 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50254 caggacgaacaaatggataaagagaatgacgaaatcgcgttgccagaaactaaaaaggaa 50195

                                                                         
Query: 288   agcgattcgaacggcgaggggaacaatgaccctgttggaaatatagaaactgaacagagc 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50194 agcgattcgaacggcgaggggaacaatgaccctgttggaaatatagaaactgaacagagc 50135

                                                                         
Query: 348   gaggtagaacctgcacagaacgaactggaaactgccaatgacaaacaagagccagcacca 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50134 gaggtagaacctgcacagaacgaactggaaactgccaatgacaaacaagagccagcacca 50075

                                                                         
Query: 408   gaaccagaatcatttactgaaaaccccaaattaccagacgtgaaggacttatggcagccc 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 50074 gaaccagaatcatttactgaaaaccccaaattaccagacgtgaaggacttagggcagccc 50015

                                                                         
Query: 468   gattctggtatagatgctccagtacatactacaacagagacaacagttgatgaagatatt 527
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 50014 gattctggtatagatgctccagtacatactacaacagagacaacagttgatgaagaaatt 49955

                                                                         
Query: 528   gataaagagcacaatactgaagcagaagcagaacctgaagtagatagtattcttgaacaa 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49954 gataaagagcacaatactgaagcagaagcagaacctgaagtagatagtattcttgaacaa 49895

                                                                         
Query: 588   gaatcgagatcagcttctcctgaaatcaatat-accgtaaagcaagaaagt-atactgct 645
             ||||||||||||||||||||||||   ||||| |||||||||||||||||| ||||||||
Sbjct: 49894 gaatcgagatcagcttctcctgaatcaaatataaccgtaaagcaagaaagtaatactgct 49835

                                                                         
Query: 646   gatcc-aaattatttgtaccgcaat-ccatgaaattgtaatcccttcatactcgaagtgg 703
             ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 49834 gatccaaaattatttgtaccgcaatcccatgaaattgtaatcccttcatactcgaagtgg 49775

                                                                         
Query: 704   tttaatttgacccaagttcatgaaatcg-agtgaaatctttaccggaattctt-actaat 761
             |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 49774 tttaatttgaccaaagttcatgaaatcgaagtgaaatctttaccggaattcttcactaat 49715

                                                                         
Query: 762   ag-ataccctcaaagac-ccccaaatgtacgtaaaat-ttgtaacttcatggtaaactc- 817
             || ||||| |||||||| ||||| |||||||| |||| | ||||||||||||||||||| 
Sbjct: 49714 agaataccttcaaagacaccccagatgtacgtcaaatatcgtaacttcatggtaaactct 49655

                                                                         
Query: 818   tattgactaattccaaatg-atacttc-caggccctgcagcttagaaaaaccctttgtgg 875
             ||| |||||| |||||||| ||||||| ||| | ||||||| ||||| || |||||||||
Sbjct: 49654 tatagactaaatccaaatgaatacttcacagtcactgcagc-tagaagaaacctttgtgg 49596

              
Query: 876   a 876
             |
Sbjct: 49595 a 49595


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7236
Number of Sequences: 1807
Number of extensions: 7236
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)