BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA11RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1328 0.0
>3x_Contig1744
Length = 24119
Score = 1328 bits (670), Expect = 0.0
Identities = 725/738 (98%), Gaps = 4/738 (0%)
Strand = Plus / Minus
Query: 48 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15913 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 15854
Query: 108 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15853 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 15794
Query: 168 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15793 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 15734
Query: 228 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15733 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 15674
Query: 288 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15673 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 15614
Query: 348 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15613 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 15554
Query: 408 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15553 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 15494
Query: 468 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 15434
Query: 528 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcatttttagcgttgt 587
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15433 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 15374
Query: 588 ctaaagacttgaaaga-ttgagagagcgtgtcggacgtatcgtaattggctctaactacg 646
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15373 ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactacg 15314
Query: 647 aaaaag-atctattactgttaacgacattggatgtgcaagggccattgcttgacttct-a 704
|||||| | |||| |||||||||||||||||||||||| | ||||||||| |||||| |
Sbjct: 15313 aaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttctaa 15254
Query: 705 aggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccagtttttggttaat 764
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 15253 aggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccag-ttttggttcat 15195
Query: 765 gctggtccatttgcaaac 782
||||||||||||||||||
Sbjct: 15194 gctggtccatttgcaaac 15177
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5661
Number of Sequences: 1807
Number of extensions: 5661
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)