BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZA12FM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1588 1518 0.0 >3x_Contig1588 Length = 14692 Score = 1518 bits (766), Expect = 0.0 Identities = 833/848 (98%), Gaps = 7/848 (0%) Strand = Plus / Minus Query: 84 tggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatcagttt 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5726 tggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatcagttt 5667 Query: 144 ccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgtctag 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5666 ccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgtctag 5607 Query: 204 tcctaatattggctg-caacgtggggaacctagcgtgcctattgataatctcatcgggta 262 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5606 tcctaatattggctgtcaacgtggggaacctagcgtgcctattgataatctcatcgggta 5547 Query: 263 aaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgtaaaat 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5546 aaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgtaaaat 5487 Query: 323 tgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacgtcgt 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5486 tgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacgtcgt 5427 Query: 383 taaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctcaacct 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5426 taaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctcaacct 5367 Query: 443 ctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccgaccgt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5366 ctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccgaccgt 5307 Query: 503 actcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattcaact 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5306 actcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattcaact 5247 Query: 563 gaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcgaact 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5246 gaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcgaact 5187 Query: 623 cacaaatcatatactcgacttcatctccccagtacaattcatcgccgtctctagactcag 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5186 cacaaatcatatactcgacttcatctccccagtacaattcatcgccgtctctagactcag 5127 Query: 683 cactttcaaaagaattcaacaactgttcaatcccattcacacgcacatgctcattgtact 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5126 cactttcaaaagaattcaacaactgttcaatcccattcacacgcacatgctcattgtact 5067 Query: 743 tgcgtgagtctagccatgacat--gggcgtcccagatgacaacaaccccatttctctttc 800 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 5066 tgcgtgagtctagccatgacatagcggcgtcccagatgacaacaaccccatttctctttc 5007 Query: 801 tcttttgaat-agcctncctttaatgcagcgaccaaaa-caccgcttagacagtaccaaa 858 ||||| |||| ||||| |||| |||||||||||||||| ||||||| ||||||||||||| Sbjct: 5006 tctttagaataagcctcccttaaatgcagcgaccaaaaccaccgctaagacagtaccaaa 4947 Query: 859 cggcgcccaaaccactaccacaaaaaaactggaga-tgacctgcccccaatacaacaaag 917 ||||||| ||||||||||||||||||| || |||| ||||||||||| |||||||||||| Sbjct: 4946 cggcgccaaaaccactaccacaaaaaacct-gagattgacctgccccaaatacaacaaag 4888 Query: 918 aacccact 925 |||||||| Sbjct: 4887 aacccact 4880 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5585 Number of Sequences: 1807 Number of extensions: 5585 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)