BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZA12RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1065 0.0
>3x_Contig1794
Length = 36744
Score = 1065 bits (537), Expect = 0.0
Identities = 591/603 (98%), Gaps = 5/603 (0%)
Strand = Plus / Plus
Query: 48 tcattcatttanttcctcaaatattgggtccaatagataatctagtcccaccaattgctc 107
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22648 tcattcattta-ttcctcaaatattgggtccaatagataatctagtcccaccaattgctc 22706
Query: 108 aaagaacttacggtatcaccgtttttgaacatgcttataacaccgcaatagatgaagctg 167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 22707 aaagaacttacggtatcaccgtttttgaacatgcttataacaccgcaatagatgaaactg 22766
Query: 168 cgctaggaaaattggtaccaggtttgatacttgttgcaagaaacgctgaatttacctttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22767 cgctaggaaaattggtaccaggtttgatacttgttgcaagaaacgctgaatttacctttg 22826
Query: 228 acgatggtttaacgtacagcttgggaatagaaacgccgtttgtggccattctaaaatctg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22827 acgatggtttaacgtacagcttgggaatagaaacgccgtttgtggccattctaaaatctg 22886
Query: 288 tggatcttgaaactcaatctttatcagtgattgaagagcttggtggtgagtgcaaagtat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22887 tggatcttgaaactcaatctttatcagtgattgaagagcttggtggtgagtgcaaagtat 22946
Query: 348 ctatgtatccacttgaaaacttgactaaaggaaagttaaaggtggccaagccagtacatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22947 ctatgtatccacttgaaaacttgactaaaggaaagttaaaggtggccaagccagtacatc 23006
Query: 408 gcaaggacattggttggtaagaatgatacaaggaagtaaaacaaattgacctcttgaaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23007 gcaaggacattggttggtaagaatgatacaaggaagtaaaacaaattgacctcttgaaga 23066
Query: 468 acatatgcaagaacacatatgctgctatttgaataaatatatagtatatacaatattgat 527
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23067 acaaatgcaagaacacatatgctgctatttgaataaatatatagtatatacaatattgat 23126
Query: 528 tgagaaggatactaaaaaagttaaattcatgattaaagaaacaactcanaacttgatgtt 587
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct: 23127 tgagaaggatactaaaaaagttaaatacatgaataaagaaacaactcaaaacttgatgtt 23186
Query: 588 aagcttgttttctcattttcgaactttgnccagttagggattaatcttgtttcaaactcc 647
||||||| |||||||||||||||||| | |||| |||||| ||||| |||||||||||||
Sbjct: 23187 aagcttg-tttctcattttcgaacttcgcccag-taggga-taatc-tgtttcaaactcc 23242
Query: 648 aaa 650
|||
Sbjct: 23243 aaa 23245
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8527
Number of Sequences: 1807
Number of extensions: 8527
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)