BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB01RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1312 0.0
>3x_Contig1588
Length = 14692
Score = 1312 bits (662), Expect = 0.0
Identities = 681/686 (99%), Gaps = 1/686 (0%)
Strand = Plus / Minus
Query: 43 gctttggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatca 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 gctttggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatca 5671
Query: 103 gtttccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 gtttccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgt 5611
Query: 163 ctagtcctaatattggctgtcaacgtggggaacctagcgtgcctattgataattttatcg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 5610 ctagtcctaatattggctgtcaacgtggggaacctagcgtgcctattgataatctcatcg 5551
Query: 223 ggtaaaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 ggtaaaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgta 5491
Query: 283 aaattgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5490 aaattgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacg 5431
Query: 343 tcgttaaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5430 tcgttaaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctca 5371
Query: 403 acctctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5370 acctctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccga 5311
Query: 463 ccgtactcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5310 ccgtactcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattc 5251
Query: 523 aactgaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5250 aactgaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcg 5191
Query: 583 aactcacaaatcatatactcgacttcatctgcccagtacaattcatcgccgtctctagac 642
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5190 aactcacaaatcatatactcgacttcatctccccagtacaattcatcgccgtctctagac 5131
Query: 643 tcagcactttcaaaag-attcaacaactgttcaatcccattcacacgcacatgctcattg 701
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5130 tcagcactttcaaaagaattcaacaactgttcaatcccattcacacgcacatgctcattg 5071
Query: 702 tacttgcgtgagtctagccctgacat 727
||||||||||||||||||| ||||||
Sbjct: 5070 tacttgcgtgagtctagccatgacat 5045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6842
Number of Sequences: 1807
Number of extensions: 6842
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)