BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB02FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1596 0.0
>3x_Contig1570
Length = 12233
Score = 1596 bits (805), Expect = 0.0
Identities = 838/846 (99%), Gaps = 3/846 (0%)
Strand = Plus / Plus
Query: 89 taaaatattcaagaactctgtatggctggctctgtacgttatattttacaaactaatcaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7399 taaaatattcaagaactctgtatggctggctctgtacgttatattttacaaactaatcaa 7458
Query: 149 gactattatattctattatattataccccacgtcctcttttatataacccttttggcaat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7459 gactattatattctattatattataccccacgtcctcttttatataacccttttggcaat 7518
Query: 209 gcagaaccnnttagnttcgaccagatatatttatgtacagctagtataaattaaatatcc 268
|||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7519 gcagaacctttgagtttcgaccagatatatttatgtacagctagtataaattaaatatcc 7578
Query: 269 ttaatgaggtttgtgctattattacagcaaagagagagaagactcagaatttgaagcttt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7579 ttaatgaggtttgtgctattattacagcaaagagagagaagactcagaatttgaagcttt 7638
Query: 329 gacgttgtaaacggtatcgtagaaagagcgactggtttttatcgagtaaacaatgggtat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7639 gacgttgtaaacggtatcgtagaaagagcgactggtttttatcgagtaaacaatgggtat 7698
Query: 389 taaggagaatcgtgacgttcatatttctaatttaaggctaaaggccttggctgtggtgac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7699 taaggagaatcgtgacgttcatatttctaatttaaggctaaaggccttggctgtggtgac 7758
Query: 449 agttttgttgtttttatgtggtttgcatttatccagatggtcaaggaccttgaaagataa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7759 agttttgttgtttttatgtggtttgcatttatccagatggtcaaggaccttgaaagataa 7818
Query: 509 tcagactgcaagtgaaccattgtgtccaaacgcaccaaatttgaaaccgccttcatacat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7819 tcagactgcaagtgaaccattgtgtccaaacgcaccaaatttgaaaccgccttcatacat 7878
Query: 569 caatgataactcgaccttggaaatgatcacacacgatgtcgaatatcgtagcgatgccgt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7879 caatgataactcgaccttggaaatgatcacacacgatgtcgaatatcgtagcgatgccgt 7938
Query: 629 tgagaaactattaggatccgttagaattcctactgaatcgtatgattctcatctagatcc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7939 tgagaaactattaggatccgttagaattcctactgaatcgtatgattctcatctagatcc 7998
Query: 689 tattgaatttcctaaggtatatgaaaacttcacagtgttacatgactatttccgtaagac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7999 tattgaatttcctaaggtatatgaaaacttcacagtgttacatgactatttccgtaagac 8058
Query: 749 gtaccctgcagtgcataagactttgaaacttgatgaaactaaatacaaatacaatttggt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8059 gtaccctgcagtgcataagactttgaaacttgatgaaactaaatacaaatacaatttggt 8118
Query: 809 ttacgtttgggaggggaaagatgctagtttaaagcctttag-tttagcaggacatcaaga 867
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8119 ttacgtttgggaggggaaagatgctagtttaaagcctttagttttagcaggacatcaaga 8178
Query: 868 tgtcgtgcctgtcaatgcagaaaccatagatcattgggggtatccacccatac-atggta 926
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct: 8179 tgtcgtgcctgtcaatgcagaaaccatagatcaatgggggtatcca-ccatacaatggta 8237
Query: 927 cgtttg 932
||||||
Sbjct: 8238 cgtttg 8243
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6366
Number of Sequences: 1807
Number of extensions: 6366
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)