BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB02RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1156 1503 0.0
>3x_Contig1156
Length = 4141
Score = 1503 bits (758), Expect = 0.0
Identities = 851/872 (97%), Gaps = 9/872 (1%)
Strand = Plus / Minus
Query: 49 atggatgccgaatcagctttggaatcctggaccttggatgtcgctgctatcaagccaact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 atggatgccgaatcagctttggaatcctggaccttggatgtcgctgctatcaagccaact 2173
Query: 109 ttgtccttccaccaaacagtcgatgatgtttacgtcgatgaagatggcgaggaaggtgaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 ttgtccttccaccaaacagtcgatgatgtttacgtcgatgaagatggcgaggaaggtgaa 2113
Query: 169 gccttagctgctgaagaagagtgggctggtgaacatgaaggtggccaagaagaagaagct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 gccttagctgctgaagaagagtgggctggtgaacatgaaggtggccaagaagaagaagct 2053
Query: 229 gttgagactactgaagttaaataagctctcgcgatcacatgcgttagtttattttaccaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 gttgagactactgaagttaaataagctctcgcgatcacatgcgttagtttattttaccaa 1993
Query: 289 tgccgctacactcacttctttaaaaatgtatgtggctagcgtatattggaatgatttatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 tgccgctacactcacttctttaaaaatgtatgtggctagcgtatattggaatgatttatt 1933
Query: 349 gtagaatcaaatactcgttcctgccgtgtacgtgccctctttaacttttaaaaatgaatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 gtagaatcaaatactcgttcctgccgtgtacgtgccctctttaacttttaaaaatgaatt 1873
Query: 409 tttccagagagctcgcaatgttactgtgtgacaggtaaaacggtagtatgtgaagtccgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 tttccagagagctcgcaatgttactgtgtgacaggtaaaacggtagtatgtgaagtccgt 1813
Query: 469 tataccattgctactctcatattctatgtaataaaacatttctatatctcttttaagtaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 tataccattgctactctcatattctatgtaataaaacatttctatatctcttttaagtaa 1753
Query: 529 cactaacttctaatatcgtgctgagttaataacagccattggaattcggtcgtaatatcg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 cactaacttctaatatcgtgctgagttaataacagccattggaattcggtcgtaatatcg 1693
Query: 589 atcaatctgtttttgattttcctgctggcttctctaggtatgaataaaaacggcccaata 648
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1692 atcaatctgttttgaattttcctgctggcttctctaggtatgaataaaaacgg-ccaata 1634
Query: 649 aatcacaagaaataacactcgaaaagtcttttggatttagttggaagttcgagctagcna 708
||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||| |
Sbjct: 1633 aatcacaggaaataacactcgaaaagtc-tttggatttagtggaaagttcgagctagcaa 1575
Query: 709 ggattagatacggaacaacgtgataattgattcaagtatccttttttagaaacataagta 768
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1574 ggataagatacggaacaacgtgataattgattcaagtatcc-tttttagaaacataagta 1516
Query: 769 tattcattttaaaagaagcagtcagttaaagtcttaataagttaagttaaaacaatttta 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1515 tattcattttaaaagaagcagtcagttaaagtcttaataagttaagttaaaacaa-ttta 1457
Query: 829 cttagcatgaaaaaaattggaaggagcttcatttaccanggttttggaccaatntgggta 888
| ||||||||||||| | ||||||||||||||||||| ||||||| |||||| ||||||
Sbjct: 1456 catagcatgaaaaaa--ttgaaggagcttcatttacca-ggttttgaaccaat-tgggta 1401
Query: 889 ttaatttggggtctttcaaatatttcaaatcc 920
|||||| ||||| ||||||||||||||||||
Sbjct: 1400 ataattt-gggtcattcaaatatttcaaatcc 1370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7796
Number of Sequences: 1807
Number of extensions: 7796
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)