BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB03RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1555 1225 0.0
>3x_Contig1555
Length = 10828
Score = 1225 bits (618), Expect = 0.0
Identities = 679/697 (97%), Gaps = 2/697 (0%)
Strand = Plus / Minus
Query: 53 gcttcgcatatcgccgattaaataattaataaatggctggtattaaacacagaagagact 112
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9293 gcttcgcatatc-ccgattaaataattaataaatggctggtattaaacacagaagagact 9235
Query: 113 cagctgagtctatcaataccgacatcatcacgttgtcccgttttatcttggaccaacagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9234 cagctgagtctatcaataccgacatcatcacgttgtcccgttttatcttggaccaacagc 9175
Query: 173 atctttctgcgaaaaatgccactggggagttttctatgcttttgaactctttgcagtttg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9174 atctttctgcgaaaaatgccactggggagttttctatgcttttgaactctttgcagtttg 9115
Query: 233 catttaaatttatttctcaaacaattagacgtgctgaattggttaacttgatcggattgg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9114 catttaaatttatttctcaaacaattagacgtgctgaattggttaacttgatcggattgg 9055
Query: 293 ctggtgcttcaaatagtaccggtgaccagcaaaagaagttggatgtgttgggtgatgaaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9054 ctggtgcttcaaatagtaccggtgaccagcaaaagaagttggatgtgttgggtgatgaaa 8995
Query: 353 tcttcatcaatgctatgaaagcgtctggtaacgtcaaggtacttgtgtctgaagaacaag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8994 tcttcatcaatgctatgaaagcgtctggtaacgtcaaggtacttgtgtctgaagaacaag 8935
Query: 413 aagatttgatcgttttccgtaacagccctggtaaatacgcggtatgttgtgacccaattg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8934 aagatttgatcgttttccgtaacagccctggtaaatacgcggtatgttgtgacccaattg 8875
Query: 473 atggttcgtctaacttggatgctggtgtctcagtgggtaccattgtctctctgttcaaga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8874 atggttcgtctaacttggatgctggtgtctcagtgggtaccattgtctctctgttcaaga 8815
Query: 533 ttcatgagaatcagaatggtaactctggggaagaagatagtgagggtaccatcaacgatg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8814 ttcatgagaatcagaatggtaactctggggaagaagatagtgagggtaccatcaacgatg 8755
Query: 593 ttgctcgttgcggtagagaaatgggtgctgcttgttacactatgtacggtgcgttcacgc 652
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 8754 ttgctcgttgcggtagagaaatggttgctgcttgttacactatgtacggtgcgtccacgc 8695
Query: 653 attttggttttactaacggtgcaagtgtaaatgggttcactttggacaatnacctggggg 712
|||| | ||| |||| ||||||| |||| ||||||||||||||||||||| | || |||
Sbjct: 8694 atttggttttaactaccggtgcaggtgtcaatgggttcactttggacaataa-cttgggt 8636
Query: 713 gaatttttcttgacttaaccaaatttgggactacctg 749
|||||| |||||||||| ||| | ||| |||||||||
Sbjct: 8635 gaatttatcttgacttacccagaattgagactacctg 8599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7585
Number of Sequences: 1807
Number of extensions: 7585
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)