BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB04FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1548 0.0
>3x_Contig1807
Length = 66587
Score = 1548 bits (781), Expect = 0.0
Identities = 814/820 (99%), Gaps = 4/820 (0%)
Strand = Plus / Plus
Query: 88 gcctattaaagcgacgaataatgcaaatatggttaaagaaacttgattcctgtgtaatgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36783 gcctattaaagcgacgaataatgcaaatatggttaaagaaacttgattcctgtgtaatgt 36842
Query: 148 gttaatgtcacttttttgttcagactcttccttctcaatcttatcgttgtcactcgtgtc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36843 gttaatgtcacttttttgttcagactcttccttctcaatcttatcgttgtcactcgtgtc 36902
Query: 208 tgtttcatcttgcgtgctgggagtatttaactttgcgaatagttttactaagtccggcgc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36903 tgtttcatcttgcgtgctgggagtatttaactttgcgaatagttttactaagtccggcgc 36962
Query: 268 aaaaaagcttccagctacacctagcacggcagaaaccataaatgccactccctcatattc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36963 aaaaaagcttccagctacacctagcacggcagaaaccataaatgccactccctcatattc 37022
Query: 328 tgttttccaacccacatttagagttaagaaaataggcataaagtaaaggacttcacacat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37023 tgttttccaacccacatttagagttaagaaaataggcataaagtaaaggacttcacacat 37082
Query: 388 gaaaaacgttgaaaggaacatattccaaagtagaatcaaagatgcaattagtctgttact 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37083 gaaaaacgttgaaaggaacatattccaaagtagaatcaaagatgcaattagtctgttact 37142
Query: 448 accagcactgaaaaacttcttccaagcgtccagataattcttaggatttctcgcactttt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37143 accagcactgaaaaacttcttccaagcgtccagataattcttaggatttctcgcactttt 37202
Query: 508 cactggcgggttttccaagacaaacataagaagaacgcagataagtaaaatgataaagct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37203 cactggcgggttttccaagacaaacataagaagaacgcagataagtaaaatgataaagct 37262
Query: 568 agaagcaaatgtgggtgcattgtaagaggtaatacgatatcctctgactgtaaaatcgca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37263 agaagcaaatgtgggtgcattgtaagaggtaatacgatatcctctgactgtaaaatcgca 37322
Query: 628 taatgcaaagagaatagccactaattgtgctaacgccatacatataccagcagatgtacg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37323 taatgcaaagagaatagccactaattgtgctaacgccatacatataccagcagatgtacg 37382
Query: 688 ataaattgagaataatttgaagatcgttgttctatccttgcttatagcggtaatgtaact 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37383 ataaattgagaataatttgaagatcgttgttctatccttgcttatagcggtaatgtaact 37442
Query: 748 atacaccaccgctccagaagacgatgctgccccgcatataatacgaccaccaagtaacgt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37443 atacaccaccgctccagaagacgatgctgccccgcatataatacgaccaccaagtaacgt 37502
Query: 808 gtttaaagagac-cgctcctgcacagaaatataggaaattg-ccacgaatgatnaaaaat 865
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 37503 gtttaaagagacgcgctcctgcacaggaatataggaaattgcccacgaatgataaaaaat 37562
Query: 866 -aagaaaga-tattacccatttgatagagccaacataact 903
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 37563 aaagaaagattattacccatttgatagagccaacataact 37602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5922
Number of Sequences: 1807
Number of extensions: 5922
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)