BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 944 0.0
>3x_Contig1781
Length = 20717
Score = 944 bits (476), Expect = 0.0
Identities = 552/571 (96%), Gaps = 5/571 (0%)
Strand = Plus / Minus
Query: 52 cttgttctgtaaattccacttctcgaatgacaccattccctccacggaatttgcccacac 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18056 cttgttctgtaaattccacttctcgaatgacaccattccctccacggaatttgcccacac 17997
Query: 112 cgccagacgcctttcttattgcaaactgacgcaagattacaggataatgtctttcgaaga 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17996 cgccagacgcctttcttattgcaaactgacgcaagattacaggataatgtctttcgaaga 17937
Query: 172 tctccacatcggtcattcttgtgttggtcatgttggtatgaacggcactggtcccttccc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17936 tctccacatcggtcattcttgtgttggtcatgttggtatgaacggcactggtcccttccc 17877
Query: 232 acgtcggatcgcctttggcatttttgcttctccagtagaagtttcctgcaccgtgcccgc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17876 acgtcggatcgcctttggcatttttgcttctccagtagaagtttcctgcaccgtgcccgc 17817
Query: 292 cgcaaatggtttcatagtatccaaatccttcgttaccgaaggtgaagttgttacaatcgc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17816 cgcaaatggtttcatagtatccaaatccttcgttaccgaaggtgaagttgttacaatcgc 17757
Query: 352 cttgggaatcagctgacacttgtaaagtctttaggatcacatcggtgactctttgtgaag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17756 cttgggaatcagctgacacttgtaaagtctttaggatcacatcggtgactctttgtgaag 17697
Query: 412 tcatcacattgccgcccaccacagccgcaccttgtcttggcgatagtacgctaccctttt 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 17696 tcatcacattgccgcccaccacagccgcaccttgtcttggcgatagtacgctaccc-ttt 17638
Query: 472 gggattatcacatcgactggttccagacagccctggntcaatgggatcttttcatccacg 531
|||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 17637 gggattatcacatcgactgggtccagacagccttggttcaatgggatctcttcatccacg 17578
Query: 532 aaaaaccg-aacacgttacacgttgcagaatacgttatcgctttctgtgccgttcaagtt 590
| | |||| ||||||| |||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 17577 agacaccgcaacacgtacaacgtcgcagaatacgttatcgc-ttctggtgcgttcaagtt 17519
Query: 591 cccattc-cttgaaggtgttgttcctgtgaa 620
||||| | |||| ||||||||||||||||||
Sbjct: 17518 cccatacacttg-aggtgttgttcctgtgaa 17489
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7017
Number of Sequences: 1807
Number of extensions: 7017
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)