BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1507 0.0
>3x_Contig1696
Length = 16725
Score = 1507 bits (760), Expect = 0.0
Identities = 823/843 (97%), Gaps = 2/843 (0%)
Strand = Plus / Minus
Query: 87 ttgacgtactctttccagtcacttctgctagaattttactgcgcaaagcagccatataat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050 ttgacgtactctttccagtcacttctgctagaattttactgcgcaaagcagccatataat 9991
Query: 147 cctggcctgacattttgactgtttactgctaatgttgacagttgagtcaaattttagaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9990 cctggcctgacattttgactgtttactgctaatgttgacagttgagtcaaattttagaaa 9931
Query: 207 ggaggacgttttttttcccggtatttcaagagaaatgttacatgtttctaatgaaactga 266
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9930 ggaggacgttcgaaagcccggtatttcaagagaaatgttacatgtttctaatgaaactga 9871
Query: 267 tcccagcacattgtaagttgtttgaacttcaaatactttcgatgggaatttcatcctggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9870 tcccagcacattgtaagttgtttgaacttcaaatactttcgatgggaatttcatcctggt 9811
Query: 327 gaaaaaatgtcaaaatcacgtgatagattctggtattacgtgtcaaaagttacatcgaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9810 gaaaaaatgtcaaaatcacgtgatagattctggtattacgtgtcaaaagttacatcgaat 9751
Query: 387 tgcatagaaataactactttaactgctgtgataaagacctacctcttttaagacgctcac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9750 tgcatagaaataactactttaactgctgtgataaagacctacctcttttaagacgctcac 9691
Query: 447 ctttacaatattttataattcatattgaatcaaataccaggcaaaaataaaggagaagga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690 ctttacaatattttataattcatattgaatcaaataccaggcaaaaataaaggagaagga 9631
Query: 507 acagctatgcgaatagtgttttggtttttgttggcaatacagtctctaaccacctgtttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9630 acagctatgcgaatagtgttttggtttttgttggcaatacagtctctaaccacctgtttt 9571
Query: 567 gcggcggtcgttggtttagatttcggtacgcactatgtaaaagagatggtggtctctttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9570 gcggcggtcgttggtttagatttcggtacgcactatgtaaaagagatggtggtctctttg 9511
Query: 627 aaggccccgttagagatcgtattgaatcctgaatctaagagaaaggatgctagtgcgtta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9510 aaggccccgttagagatcgtattgaatcctgaatctaagagaaaggatgctagtgcgtta 9451
Query: 687 gcaattagatcatgggatagtcagaactatttggaaaggttttatggaagttctgcggta 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9450 gcaattagatcatgggatagtcagaactatttggaaaggttttatggaagttctgcggta 9391
Query: 747 gccttggcaactcgattcccatcaacaacatttatgcactttgaaagtctattgnggaaa 806
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 9390 gccttggcaactcgattcccatcaacaacatttatgcacttgaaaagtctattggggaaa 9331
Query: 807 cattatganngatatctgttctattatcatagggaacatncaggnttagagttccgtaat 866
|||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 9330 cattatgaggataatctgttctattatcatagggaacatccagggttagagttcgttaat 9271
Query: 867 gacgcttctcgtaatgccattgctttcgaaattgac-ctaaca-cactctctctgtggaa 924
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 9270 gacgcttctcgtaatgccattgctttcgaaattgacactaacaccactctctctgtggaa 9211
Query: 925 gaa 927
|||
Sbjct: 9210 gaa 9208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6480
Number of Sequences: 1807
Number of extensions: 6480
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)