BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB05RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1302 0.0
>3x_Contig1605
Length = 12373
Score = 1302 bits (657), Expect = 0.0
Identities = 819/861 (95%), Gaps = 9/861 (1%)
Strand = Plus / Plus
Query: 48 tgaaagaaaacttgaataaagcagaa-gcataatcgcttcctgtccagcttgtaagaaga 106
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5695 tgaaagaaaacttgaataaagcagaaagcataatcgcttcctgtccagcttgtaagaaga 5754
Query: 107 atttcaacacaattttctgtcacttcacttgttctcctaaccaaaggcagtttattgata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 atttcaacacaattttctgtcacttcacttgttctcctaaccaaaggcagtttattgata 5814
Query: 167 taattagtacagatgaatcgagtgatggtagagaaattgtttctgagttgaatttctttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 taattagtacagatgaatcgagtgatggtagagaaattgtttctgagttgaatttctttt 5874
Query: 227 tgaactcttcatgggcatcatcattttatgattcttgtaagaacgtaaaattttcagcta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 tgaactcttcatgggcatcatcattttatgattcttgtaagaacgtaaaattttcagcta 5934
Query: 287 cgaatggttatgctatggatttgataggaggtggtgcgtcagattattctgaatttatga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 cgaatggttatgctatggatttgataggaggtggtgcgtcagattattctgaatttatga 5994
Query: 347 aatttttaggagacaaaaagcctgcgttagggggttctccatttcaaataaactatgaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 aatttttaggagacaaaaagcctgcgttagggggttctccatttcaaataaactatgaat 6054
Query: 407 atgagacaagttcagatgagtactcattgtttgacgaaaacgttttcgcctgtagcgatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055 atgagacaagttcagatgagtactcattgtttgacgaaaacgttttcgcctgtagcgatc 6114
Query: 467 caaagtacaagtgtgcatgtgctgattgctcaaactcatgtccaactcttgctccaatca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 caaagtacaagtgtgcatgtgctgattgctcaaactcatgtccaactcttgctccaatca 6174
Query: 527 aaaaagggcgttgcatggtagctggtataccatgcactttcctttgcctttttggttttg 586
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 6175 aaaaagggcgttgcatggtagctggtataccatgcac-ttcctttgcccttttggttttg 6233
Query: 587 tatgcgttagctttccttgcgattggaggttggcatattatcattttcaaacgtcgaaag 646
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6234 tatgcgttagctttccttgcgattggaggttggcatattatcattttcagacgtcgaaag 6293
Query: 647 a-taagtccactaactttgtgga-ggtagtgaacctttgctggataatggttacgctgcc 704
| ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 6294 attaagtccactaacattgtggagggtagtgaacctttgctggataatggtaacgctgcc 6353
Query: 705 atttcagatattgatgatggcctattccgag-attttccacccgaagaaaccctttgaat 763
| ||||||||||||||||||||||||| || || | ||||| ||||||| || |||||
Sbjct: 6354 aattcagatattgatgatggcctattcgtagaatatgccaccgaaagaaacgctatgaat 6413
Query: 764 gattaaaatttcggacgttcttttgaacactgggggccgcctggctcaaaaaatctttta 823
|| |||||| ||||||||||||| ||||||| | ||||||||| ||||||| || |||
Sbjct: 6414 ga-taaaatctcggacgttctttcgaacact-gtggccgcctgcatcaaaaatcctatta 6471
Query: 824 ccgggttttcttacttggtttttttatttacaattcttttggaagcccttaatagatttt 883
||| ||| ||||||| || | |||| |||||||||||||| || ||||||||| |||
Sbjct: 6472 ccgtgttatcttactcggctatttttattacaattcttttgatag-ccttaatagtattt 6530
Query: 884 ggggattttggaaacggatcc 904
|| || |||||||||||||||
Sbjct: 6531 ggtga-tttggaaacggatcc 6550
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7754
Number of Sequences: 1807
Number of extensions: 7754
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)