BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB06RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1279 0.0
3x_Contig1601 103 6e-22
>3x_Contig1741
Length = 21706
Score = 1279 bits (645), Expect = 0.0
Identities = 719/737 (97%), Gaps = 5/737 (0%)
Strand = Plus / Plus
Query: 37 cttgcaaatggctt-acaatctcttctagattgttcagatgcgacaggagaagtaagttc 95
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12198 cttgcaaatggcttcacaatctcttctagattgttcagatgcgacaggagaagtaagttc 12257
Query: 96 aatataatcaacaccaaagtcatctagggccttggcaatctcgatcttcttttcagtatc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258 aatataatcaacaccaaagtcatctagggccttggcaatctcgatcttcttttcagtatc 12317
Query: 156 gaaaaaggcgttggcaaattgttcaccttctcttaatgtagaatcgatcaactgatagtt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12318 gaaaaaggcgttggcaaattgttcaccttctcttaatgtagaatcgatcaactgatagtt 12377
Query: 216 gttaacatttgataaataatcagctgggtttggaccgtatggattttgttgaaattttgt 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12378 gttaacatttgataaataatcagctgggtttggaccgtatggattttgttgaaattttgt 12437
Query: 276 cacacttgatgcagattcagtcactggttggaaatcctgattgctactcatgatttgtta 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12438 cacacttgatgcagattcagtcactggttggaaatcctgattgctactcatgatttgtta 12497
Query: 336 ttgtctatcgctagtttatctactttttttgctcttcaaatggaaatattctcctattct 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12498 ttgtctatcgctagtttatctactttttttgctcttcaaatggaaatattctcctattct 12557
Query: 396 gccttataatactctaagagaaatgaaatgaatgtaatccaaatatatatatatatagta 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12558 gccttataatactctaagagaaatgaaatgaatgtaatccaaatatatatatatatagta 12617
Query: 456 taatatatagctccaataaaaaataatatcacaaaaatattattaagttgtaacaagaat 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12618 taatatatagctccaataaaaaataatatcacaaaaatattattaagttgtaacaagaat 12677
Query: 516 cgatcacacaaacaaaacagtcgatcctgagagcatattaactagacatag-aacacctg 574
|||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||
Sbjct: 12678 cgatcacacaaacaaaacagtcgaacctgagagcatataaactagacaaagaaacacctg 12737
Query: 575 ccatcaaatgtagagcagttccttttttttttttttagactcattcatgtcatcgaaact 634
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 12738 ccatcaaatgtagagcagttcc-ttttttttttttcagactcattcatgtcatcgaaact 12796
Query: 635 gccttgatatggcttgactcatctgaaatctgatttttttctttcccat-attgaaatat 693
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 12797 gccttgatatggcttgactcatctgaaatctgaattttttctttcccataattgaaatat 12856
Query: 694 tggcaatgaaaaggaatttggtaaaattcccactcattttcaagctaaagtcttatcatg 753
| |||||||||| ||| |||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 12857 ggtcaatgaaaagaaatatggtaaaattcccactcaatttcgagctaaagtctaatcatg 12916
Query: 754 accacattttcgggaat 770
|||| ||||||| ||||
Sbjct: 12917 acca-attttcgtgaat 12932
>3x_Contig1601
Length = 11162
Score = 103 bits (52), Expect = 6e-22
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 51 acaatctcttctagattgttcagatgcgacaggagaagtaagttcaatataatcaacacc 110
|||||| ||||||||||||||||| || || ||||| |||||||| |||||||| |||||
Sbjct: 4351 acaatcgcttctagattgttcagaggccaccggagaggtaagttcgatataatcgacacc 4292
Query: 111 aaagtcatctagggccttggcaatctcgatcttcttttcagtatcgaaaaaggcgttggc 170
|| ||||||| |||||||| || ||||| ||||| |||||| |||||| || | ||
Sbjct: 4291 gaaatcatctaaagccttggcgatttcgattttcttctcagtagagaaaaatgcacttgc 4232
Query: 171 aaattgttcaccttctctta 190
|||||| |||||||||||||
Sbjct: 4231 aaattgctcaccttctctta 4212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,151
Number of Sequences: 1807
Number of extensions: 21151
Number of successful extensions: 1341
Number of sequences better than 1.0e-20: 2
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)