BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB08FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1113 815 0.0
3x_Contig1371 389 e-108
>3x_Contig1113
Length = 4340
Score = 815 bits (411), Expect = 0.0
Identities = 487/505 (96%), Gaps = 6/505 (1%)
Strand = Plus / Plus
Query: 425 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 82
Query: 485 g-gtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcgtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 142
Query: 544 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 202
Query: 604 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 262
Query: 664 ttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattcaatcaacattaa 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattcaatcaacattaa 322
Query: 724 aagcgtaataacaggacanacatattatgtatcaagacgaccagagcgagtaaaccaagt 783
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagtaaaccaagt 382
Query: 784 ctcttaaa-cagaattt-acgccaaggttggtgaaataccat-atcatgacgaaagtttt 840
|||||||| |||||||| |||||||| |||||||||||| || ||||||||||||| |||
Sbjct: 383 ctcttaaaccagaatttaacgccaagtttggtgaaatacaataatcatgacgaaaggttt 442
Query: 841 ggttgagataagactagctagattc-gaagggaacatacccca-tatacaacatagntgt 898
||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||
Sbjct: 443 ggtgaggataagactagctagattcggaaggaaacataccccagtatacaacatagttgt 502
Query: 899 tacccaacaacataaggcgttgaat 923
|||| | |||||||||||||||||
Sbjct: 503 taccaacaaacataaggcgttgaat 527
>3x_Contig1371
Length = 6052
Score = 389 bits (196), Expect = e-108
Identities = 205/208 (98%)
Strand = Plus / Plus
Query: 87 gacgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5845 gacgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaagt 5904
Query: 147 taaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgttag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905 taaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgttag 5964
Query: 207 atgagatgatctttgagatgagctagattgaaaattttatacagcttgtgaaaaatttct 266
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5965 atgagatgagcgatgagatgagctagattgaaaattttatacagcttgtgaaaaatttct 6024
Query: 267 ttttaagcccttagtgatgaagcagcaa 294
||||||||||||||||||||||||||||
Sbjct: 6025 ttttaagcccttagtgatgaagcagcaa 6052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7756
Number of Sequences: 1807
Number of extensions: 7756
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)