BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB08RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1532 0.0
>3x_Contig1799
Length = 39855
Score = 1532 bits (773), Expect = 0.0
Identities = 865/887 (97%), Gaps = 7/887 (0%)
Strand = Plus / Minus
Query: 48 tacccttggtttccgggtgttggtagatatgagcgtgggatcttgaccatcagttgtact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36210 tacccttggtttccgggtgttggtagatatgagcgtgggatcttgaccatcagttgtact 36151
Query: 108 tgtcatagaaggatccaggccattcacagtaggatccaattcaaaatcaagcctcatgtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36150 tgtcatagaaggatccaggccattcacagtaggatccaattcaaaatcaagcctcatgtt 36091
Query: 168 cccatcttcagtcgcgttgccttgaaatgccgagagatcgttcatatcatcatctataga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36090 cccatcttcagtcgcgttgccttgaaatgccgagagatcgttcatatcatcatctataga 36031
Query: 228 catcgtttacggtactgtctcaaaaaagcaaagagcacacacacttgtagatataaaaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36030 catcgtttacggtactgtctcaaaaaagcaaagagcacacacacttgtagatataaaaaa 35971
Query: 288 tactattccgtgccaaatatgaggacttcgacaactgagagcgagagacactatttatgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35970 tactattccgtgccaaatatgaggacttcgacaactgagagcgagagacactatttatgt 35911
Query: 348 tatcttaaatcgataatgctcttcgacttcagttaagtttggcgtagtatatttcacgga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35910 tatcttaaatcgataatgctcttcgacttcagttaagtttggcgtagtatatttcacgga 35851
Query: 408 aaggaaaagaaataaagtcacgtgaacaatatttacattttcttttggttcgtctggtga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35850 aaggaaaagaaataaagtcacgtgaacaatatttacattttcttttggttcgtctggtga 35791
Query: 468 cattatcagcgtcaagaatctcaacgcagacatttattgcgacagacacagtgacgcgtc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35790 cattatcagcgtcaagaatctcaacgcagacatttattgcgacagacacagtgacgcgtc 35731
Query: 528 gaaaagtcaagagaaggcattcagggggaatgccaagagacaacaaaacgggcaagcaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35730 gaaaagtcaagagaaggcattcagggggaatgccaagagacaacaaaacgggcaagcaaa 35671
Query: 588 aagaagcaccgtgaaattttaagtcaaggctgtccttctgataagcaagatagcaagcca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35670 aagaagcaccgtgaaattttaagtcaaggctgtccttctgataagcaagatagcaagcca 35611
Query: 648 aacactatgttttggctgcgttgataagaagacanatgctgtcaatcacgtgataatccc 707
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 35610 aacactatgttttggctgcgttgataagaagacaaatgctgtcaatcacgtgataatccc 35551
Query: 708 tcttttttaagttttcttgggggcattcattangcgcatgtcacatgctctgttgaggaa 767
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 35550 tcttttttaagttttcttgggggcattcattaggcgcatgtcacatgctctgttgaggaa 35491
Query: 768 tgagtgggaagccacacttttttattgcggtacttttcacttnaggctgatgaaaagaat 827
||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 35490 tgagtggaaagccacac-tttttattgcggtac-tttcactt-aggctgatgaaaag-at 35435
Query: 828 cggggtttgaagtttcctgctgnaaaggttattggggaaatggtcaaatgaatacgccca 887
||| |||||||| ||||||||| | |||||||| | |||| ||||||||| |||| ||
Sbjct: 35434 cggtgtttgaag-ttcctgctg-agaggttatt-gtgaaagtgtcaaatgataacgcaca 35378
Query: 888 tttacgggctggcttttgattcccttgcccacagaattggtccattt 934
|| |||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 35377 ttaacgggctgccttttgattcctttgcccacagaagtggtccattt 35331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)