BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB09FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig272 1195 0.0
>3x_Contig272
Length = 1587
Score = 1195 bits (603), Expect = 0.0
Identities = 623/627 (99%), Gaps = 2/627 (0%)
Strand = Plus / Minus
Query: 85 cgtaaaacatccaaaacagacctgtcatatcacgacgggtattcatcagagtcttctggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgtaaaacatccaaaacagacctgtcatatcacgacgggtattcatcagagtcttctggc 566
Query: 145 gaagagaaggaacgtgctatttccgaagttagcctgggacagtatgttgttcattctgca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagagaaggaacgtgctatttccgaagttagcctgggacagtatgttgttcattctgca 506
Query: 205 gaatcttttattttcagaaaccctgtcaggaactctgttctcgattcaagcgatgatgac 264
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatcttttaaattcagaaaccctgtcaggaactctgttctcgattcaagcgatgatgac 446
Query: 265 atagattatactgatgaggatggagatttagaagtcactaaaagtggctatttcgctgcg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagattatactgatgaggatggagatttagaagtcactaaaagtggctatttcgctgcg 386
Query: 325 atggttgatgaggacaaggaaatcgacgattcagataggcatacattgaataacaacgat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggttgatgaggacaaggaaatcgacgattcagataggcatacattgaataacaacgat 326
Query: 385 acagatggactgacagctgatagcgatgttaattcgataacggagagcgtaacgaaacga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagatggactgacagctgatagcgatgttaattcgataacggagagcgtaacgaaacga 266
Query: 445 ttgagtcaatcctctataacccaatcggacgttccagatcagaattctgaaaatgacgtc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgagtcaatcctctataacccaatcggacgttccagatcagaattctgaaaatgacgtc 206
Query: 505 ggaggatattctgacagctctgaagacgaggaagacggcccacagaaattagcattctca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaggatattctgacagctctgaagacgaggaagacggcccacagaaattagcattctca 146
Query: 565 accagggagtcaatcaatctaggcaagtggaaaccagacaccgatgcattccgatctggt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 accagggagtcaatcaatctaggcaagtggaaaccagacaccgatgcattccgatctggt 86
Query: 625 tttgttactgagaccatcgatatcaacaatcctcccgaaggatacaccgtaaatgaggac 684
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 85 tttgttactgagaccatcgatatcaacaatcctcccg-aggatacaccgtaaatgaggac 27
Query: 685 ggngaaattgttgaagtgaacaaaaac 711
|| ||||||||||||||||||||||||
Sbjct: 26 gg-gaaattgttgaagtgaacaaaaac 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5384
Number of Sequences: 1807
Number of extensions: 5384
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)