BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB09RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1298 0.0
3x_Contig1073 163 8e-40
>3x_Contig652
Length = 2532
Score = 1298 bits (655), Expect = 0.0
Identities = 681/688 (98%), Gaps = 2/688 (0%)
Strand = Plus / Plus
Query: 50 gttaaattgtgaaaacatccggaattttattaatgctgttggtttccccgataggttcaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 gttaaattgtgaaaacatccggaattttattaatgctgttggtttccccgataggttcaa 1895
Query: 110 aagtattacttctcaagcggagtacaaaggcgctaccgcggttatatttgcagcgctatt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 aagtattacttctcaagcggagtacaaaggcgctaccgcggttatatttgcagcgctatt 1955
Query: 170 tagagcgaaggactataaatcagttatcatgttcaatgaaatctgtccatgcctagacat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 tagagcgaaggactataaatcagttatcatgttcaatgaaatctgtccatgcctagacat 2015
Query: 230 ttcattgatcttgaaatctttcattcgcctaggtgactatgataattatctttctcaaga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 ttcattgatcttgaaatctttcattcgcctaggtgactatgataattatctttctcaaga 2075
Query: 290 agcgaggtttaaagattctatgtcgcctgctgcccttggcgtaattcgatccgaatatct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2076 agcgaggtttaaagattctatgtcgcctgctgcccttggcgtaattcgatccgaatatct 2135
Query: 350 aataaatcaaaagaaatttgaagatgcaatgttactgcttaaatctttcccagatgttat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 aataaatcaaaagaaatttgaagatgcaatgttactgcttaaatctttcccagatgttat 2195
Query: 410 cgatcatcaaacctatgacaagtactcttttgcattatttttatcatcattctccggaac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 cgatcatcaaacctatgacaagtactcttttgcattatttttatcatcattctccggaac 2255
Query: 470 tcctgttgatgtagacttccaaatcgaaaacacgttgcagttagcgaacgtgctctcagc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 tcctgttgatgtagacttccaaatcgaaaacacgttgcagttagcgaacgtgctctcagc 2315
Query: 530 ccaacattctttccacaatatgattcactgttacgaaagcatgaccaaaggataggaatt 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2316 ccaacattctttccacaatatgattcactgttacgaaagcatgaccaaaggaaaggaatt 2375
Query: 590 ttcacaagacttgaagntgaaactttggcattaagatggaaattacccaancaattctca 649
|||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct: 2376 ttcacaagacttgaagttg-aactttggcattaagatggaaattacccaacaaattctca 2434
Query: 650 ac-atattgaagattctatgcaatttcttgatttaaatgatacttctattatagagaact 708
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2435 acaatattgaagattctatgcaatttcttgatttaaatgatacttctattatagagaact 2494
Query: 709 attactncaaactcgaaaactacatgag 736
|||||| |||||||||||||||||||||
Sbjct: 2495 attactccaaactcgaaaactacatgag 2522
>3x_Contig1073
Length = 3973
Score = 163 bits (82), Expect = 8e-40
Identities = 182/209 (87%), Gaps = 5/209 (2%)
Strand = Plus / Minus
Query: 717 aaactcgaaaactacatgaggattcaaggggttatcttaaaacaataactttcaccgaag 776
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 3973 aaactcgaaaactacatgag-attcagagggttatcttaaaacaataactttcaccgaag 3915
Query: 777 acccaaatgttgcagttgctc-atatatgggcaaatattaacccatttttgggtgacaa- 834
| ||||||||||||||||||| |||||||| ||| ||||||||| |||||| ||||||
Sbjct: 3914 a-ccaaatgttgcagttgctcaatatatggcaaaaaattaacccaattttggttgacaat 3856
Query: 835 ttgtttcacancatcggccaatcagtttgtttagacaacgctggaaaagtttttaaactc 894
||||| ||| ||||| | ||||||| ||||| ||||||||| ||| ||| | || ||
Sbjct: 3855 ttgttcaacaacatcgtcgaatcagtatgtttgaacaacgctgtaaaggttataaacttc 3796
Query: 895 aatgaataagggttcttttaacgttagca 923
|||| |||| |||||||||||||||||||
Sbjct: 3795 aatg-ataatggttcttttaacgttagca 3768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7221
Number of Sequences: 1807
Number of extensions: 7221
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)