BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB10FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1513 0.0
>3x_Contig1594
Length = 9813
Score = 1513 bits (763), Expect = 0.0
Identities = 818/833 (98%), Gaps = 3/833 (0%)
Strand = Plus / Plus
Query: 84 gcctcaattggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaatta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 gcctcaattggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaatta 5616
Query: 144 tcaactagatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactga 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 tcaactagatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactga 5676
Query: 204 gactgtcattcctttagccaaggaaactattgctagtggttcgaaagctacagaagagtc 263
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gactgtcattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtc 5736
Query: 264 cgctagtgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctgga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 cgctagtgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctgga 5796
Query: 324 tactgaaaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 tactgaaaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctga 5856
Query: 384 taccagcgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5857 taccagcgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggc 5916
Query: 444 cgtggtcatttggatcgttataggtttcttactttggtattggttatcttaggatacatt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5917 cgtggtcatttggatcgttataggtttcttactttggtattggttatcttaggatacatt 5976
Query: 504 ctgattaagtgagggaactatcaaccatcgtataatatatgacaacatatttctcgactt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5977 ctgattaagtgagggaactatcaaccatcgtataatatatgacaacatatttctcgactt 6036
Query: 564 tgatagaaatgttgttatgaattatattcgtatttcttttcttatctacgtctgtttctt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6037 tgatagaaatgttgttatgaattatattcgtatttcttttcttatctacgtctgtttctt 6096
Query: 624 ttgttttaattacccccgtactttttaacctgtttgttcttttctttgcaggatttcttc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6097 ttgttttaattacccccgtactttttaacctgtttgttcttttctttgcaggatttcttc 6156
Query: 684 atgcggctaanatcattcttcattattggtattgtattatcattacagccattagtacta 743
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6157 atgcggctaaaatcattcttcattattgttattgtattatcattacagccattagtacta 6216
Query: 744 tgttttcccctagccaagacattgacaagatatttgagttagtattgaaattgttcatct 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217 tgttttcccctagccaagacattgacaagatatttgagttagtattgaaattgttcatct 6276
Query: 804 tgtgacacagctgttcttttcatcgntgtttgcgtgaaaacactcattg-aaacaaaagg 862
||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||
Sbjct: 6277 tgtgacacagctgttcttttcatcgttgtttcgttgaaacaactcattgaaaacaaaggg 6336
Query: 863 agacgaaaga-attgaactaattctccttcaatatgatccc-atatactcagc 913
|||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 6337 agacgaaagatattgaactaattctccttcaaattgatcccaatatactcagc 6389
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7429
Number of Sequences: 1807
Number of extensions: 7429
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)