BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB11FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1544 0.0
>3x_Contig1296
Length = 7334
Score = 1544 bits (779), Expect = 0.0
Identities = 825/840 (98%), Gaps = 1/840 (0%)
Strand = Plus / Plus
Query: 84 taacggataatttttattttcttcttttcaggtaataattaattgattaatttttaaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2369 taacggataatttttattttcttcttttcaggtaataattaattgattaatttttaaaaa 2428
Query: 144 gtacatgacagtatatggttaatttttgggatgtctttatacgtccatctctcatatatg 203
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2429 gtacatgacagtatatggttaataattgggatgtctttatacgtccatctctcatatatg 2488
Query: 204 ttgctcatnnngtaacgtgacgaataagatgcaattaatcgctttgttgtgtgtctcctt 263
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2489 ttgctcactttgtaacgggacgaataagatgcaattaatcgctttgttgtgtgtctcctt 2548
Query: 264 ggtatttcaacttcaagaagaaattcacgatgacagctaccaacaaaaagaaacatagca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2549 ggtatttcaacttcaagaagaaattcacgatgacagctaccaacaaaaagaaacatagca 2608
Query: 324 aggtagggccaaatctatcatcatatggaccggatcctctgcgtctaattgcagccgctc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2609 aggtagggccaaatctatcatcatatggaccggatcctctgcgtctaattgcagccgctc 2668
Query: 384 tccaatggtacgtcaccaatgcataaatcatagttcccatcgctaccagtgtgaaaagtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2669 tccaatggtacgtcaccaatgcataaatcatagttcccatcgctaccagtgtgaaaagtc 2728
Query: 444 cagcactgatacgaccaactttatccccgaaatttaacaaaccgacacctaaacctccaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2729 cagcactgatacgaccaactttatccccgaaatttaacaaaccgacacctaaacctccaa 2788
Query: 504 gcatcactgtgaagtttaaccatgataggaaagtacgttcgttggcgaaaaacaccttag 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2789 gcatcactgtgaagtttaaccatgataggaaagtacgttcgttggcgaaaaacaccttag 2848
Query: 564 gttcaactcttgttggcaaagcgatacgcttgccaggagctttctgtagtaaaggagcag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2849 gttcaactcttgttggcaaagcgatacgcttgccaggagctttctgtagtaaaggagcag 2908
Query: 624 acatttctttctgtattgatagatgatgataatctttactttctgaactaaacaagaaaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2909 acatttctttctgtattgatagatgatgataatctttactttctgaactaaacaagaaaa 2968
Query: 684 ttcagatgtgtattaataaagactggaaggtgatcggcggaatcttctgtatcagatttt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2969 ttcagatgtgtattaataaagactggaaggtgatcggcggaatcttctgtatcagatttt 3028
Query: 744 aatcttccttatatatgtgaatttgatagtttcggcagacaaaaaaaaaaactgatgcgt 803
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3029 aatcttccttatatatgtgaatttgatagtttcggcagacaaaaaaaagaactgatgcgt 3088
Query: 804 ttctgtaaaagtgcagttcccaattaataacccactcgttttagtaccctctgtttccaa 863
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 3089 ttctgtaaaagtgcagttcccaattaataacccactcgtttaagtaccctctgttcccaa 3148
Query: 864 caatatatactatgttaaaataagacaagg-aaacagatcgctaaacgtaaattatcagc 922
||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||
Sbjct: 3149 caatatatactatgttaaattaggacaaggaaaacagatcgctaacggtaaattatcagc 3208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,340
Number of Sequences: 1807
Number of extensions: 12340
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)