BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB11RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1310 0.0
>3x_Contig1666
Length = 16162
Score = 1310 bits (661), Expect = 0.0
Identities = 771/794 (97%), Gaps = 11/794 (1%)
Strand = Plus / Plus
Query: 49 cttacaataatcgcatgccttgacacctcgcgtacctcttttcgctggtgttttcttagc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 cttacaataatcgcatgccttgacacctcgcgtacctcttttcgctggtgttttcttagc 2062
Query: 109 tatcttattttgtccagtgctcattaatgaagagtgctatgattccttgtaatattatag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2063 tatcttattttgtccagtgctcattaatgaagagtgctatgattccttgtaatattatag 2122
Query: 169 taagaaaaagcactgtcaaggacaaaaaaaatcttcgtttttcaaggatgaactgtaata 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2123 taagaaaaagcactgtcaaggacaaaaaaaatcttcgtttttcaaggaggaactgtaata 2182
Query: 229 tctaccaatattcaactcctacgctctctcctaccatgtaacgactactggagatgtgct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 tctaccaatattcaactcctacgctctctcctaccatgtaacgactactggagatgtgct 2242
Query: 289 ccgtatacctttgtatatgtaaatctggctaatcgaactaatttcaagatgcatttgtgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 ccgtatacctttgtatatgtaaatctggctaatcgaactaatttcaagatgcatttgtgt 2302
Query: 349 ttctttttgacaaatttcacggtataaatggataaagaggttacaatcacaggaaaaaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 ttctttttgacaaatttcacggtataaatggataaagaggttacaatcacaggaaaaaaa 2362
Query: 409 cgatatacatcacgaaaataggtggtagactactttaactggtctcaatcattgcataat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 cgatatacatcacgaaaataggtggtagactactttaactggtctcaatcattgcataat 2422
Query: 469 attcttcagcttgacactactggtcgcctcaaaaattggcatcgaaccagcttcttatta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 attcttcagcttgacactactggtcgcctcaaaaattggcatcgaaccagcttcttatta 2482
Query: 529 ccactttttacttatccaggcatagattctccatataaaattccatttcacactatcctt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 ccactttttacttatccaggcatagattctccatataaaattccatttcacactatcctt 2542
Query: 589 tgtangggaaacttcgaaaaaaccttg-aaaaaagtcatanaag-atttaagtangagta 646
|||| |||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||
Sbjct: 2543 tgtaggggaaacttcgaaaaaaccttgaaaaaaagtcataaaagaatttaagtaggagta 2602
Query: 647 cttgatacgtgttttaagttggaaga-ggttcacttggagaatcaagtctcgaattgatt 705
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
Sbjct: 2603 cttgatacgtgttttaagttggaagagggttcactggaggaatcaagtctcgaattgaat 2662
Query: 706 tgat-acagttttaaccgtattattcgagg-tattacactgg-aaaaatgatcttcaagt 762
|||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 2663 tgataacagtttaaaccgtattattcgaggatattacactggaaaaaatgatctccaag- 2721
Query: 763 ttgttca-gctattttgtgccgttttcgtactttgcta-tgttactgccggggcgcctcg 820
||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||| ||||
Sbjct: 2722 ttgttcaggctattttgtgccgttttcgtac-ttgctagtgttactgccggtgcg-ctcg 2779
Query: 821 ttgaaaatttcaag 834
||||| ||||||||
Sbjct: 2780 ttgaagatttcaag 2793
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6711
Number of Sequences: 1807
Number of extensions: 6711
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)