BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZB12FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1269 0.0
>3x_Contig1795
Length = 38452
Score = 1269 bits (640), Expect = 0.0
Identities = 777/820 (94%), Gaps = 2/820 (0%)
Strand = Plus / Plus
Query: 82 ctgcttttaagttatagaaacttgcctaaaggggcatctggtgtatacatcacagatatc 141
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24611 ctgcttttaagttttagaaacttgcctaaaggggcatctggtgtatacatcacagatatc 24670
Query: 142 atagccgatatgtgccttacatatttgtgatttgaattgtgatcgatcgcttcaacggat 201
|||| |||||||| ||||||| | ||| |||||||||||| |||||||||||||||||||
Sbjct: 24671 atagtcgatatgttccttacagaattgggatttgaattgttatcgatcgcttcaacggat 24730
Query: 202 ccttcatgtcca-tacctaattggagaggagacctatctgtctctttgaagtaaccacca 260
|||||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24731 ccttcaggtccaattccgaattggagaggagacctatctgtctctttgaagtaaccacca 24790
Query: 261 cctccgtgattaaccaacccttgcgcttcaataattttcttaaggacatccggagggctt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791 cctccgtgattaaccaacccttgcgcttcaataattttcttaaggacatccggagggctt 24850
Query: 321 gctgcaagaaactgaataaaatgtgtgcaagacacaggttcatcaacagatgagtcaaca 380
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24851 gctgcaggaaactgaataaaatgtgtgcaagacacaggttcatcaacagatgagtcaaca 24910
Query: 381 ctctgaaaattcaaatcaacagaagacatatcttcgtaagcgccaatgcctaatcaaagc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24911 ctctgaaaattcaaatcaacagaagacatatcttcgtaagcgccaatgcctaatcaaagc 24970
Query: 441 agtaaatactgcaaagttgccaaaggactgtgacccgggatcctacgcgttcttcgatta 500
||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct: 24971 agtaaatactgcagagttgccaaaggactgtgacccgggatccttcgtgtttttcgatta 25030
Query: 501 cttagtttgatatttttaatgtgttctaagagtgcaaacggttaattttattctactgat 560
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 25031 cttagtttgatatttttaatgtgttcgaagagtgcaaacggttaattttattctactgtt 25090
Query: 561 ggaatatttcatgttcaaccggtgacaaacaaaaacatgaaagcgtgggaccatcagctc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 25091 ggaatatttcatgttcaaccggtgacaaacaaaaacatgaaagcgtgggaccatcagttt 25150
Query: 621 attggaaagcagaaatgtgactataggctgctatccgatatcctgtaattgcacttcttc 680
||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 25151 attggaaagtagaaatgtgactataggctgctatctgatat-ttgtaattgcacttcttc 25209
Query: 681 aaaggaagcaccgcttatcaaaggtaaaacaatccaacaaatttatacaacagtaaggac 740
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 25210 aaaggaagcaccgcttttcaaaggtaaaacaatccaacaaatttatacaacagtaagaac 25269
Query: 741 actatatatcaaaataataattagaccttcgctacctttcctctggcatgtgggatttca 800
||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct: 25270 actatatatcaaaataataattagaccttggtttcctttcctctggcatgtggtatttca 25329
Query: 801 tcctaagacttccttttgaatgatgccagttcagaacctgtatacgatatcacagttgta 860
|||| |||||||||||| |||||| | ||||||||||||||| |||| |||||||||
Sbjct: 25330 tcctcagacttccttttcaatgatccaggttcagaacctgtatccgattcgacagttgta 25389
Query: 861 gttgcagtagcagcccttaaagcatctgaaagtcttttat 900
||| ||||||||||| | |||||||||| |||||||||||
Sbjct: 25390 gtttcagtagcagccttcaaagcatctgtaagtcttttat 25429
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6296
Number of Sequences: 1807
Number of extensions: 6296
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)