BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC01FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1530 0.0
>3x_Contig1474
Length = 10584
Score = 1530 bits (772), Expect = 0.0
Identities = 819/831 (98%), Gaps = 4/831 (0%)
Strand = Plus / Minus
Query: 88 ttaaattattaggcaactggatgtacctgtacttccgatcgtctaaatctggctttaaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7648 ttaaattattaggcaactggatgtacctgtacttccgatcgtctaaatctggctttaaaa 7589
Query: 148 actcggaatctgtccctaaggtcctgtatttattagacattttcgtattataatgcaaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7588 actcggaatctgtccctaaggtcctgtatttattagacattttcgtattataatgcaaaa 7529
Query: 208 aacggtatttttatgttagcaaacaactgacagatatctttgaagccaatagggacgtcg 267
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528 aacggtatctcgatgttagcaaacaactgacagatatctttgaagccaatagggacgtcg 7469
Query: 268 gttgagataatattccctgaaccgctgctagcatcagtttctagaactagtattattcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7468 gttgagataatattccctgaaccgctgctagcatcagtttctagaactagtattattcca 7409
Query: 328 aatgaataaccgctggaaatccccttaaaactgtatgtgtgttcaaaagtgttcaaaaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7408 aatgaataaccgctggaaatccccttaaaactgtatgtgtgttcaaaagtgttcaaaaaa 7349
Query: 388 aaaaagcctttgatttaatccgaagaaaaaatatcaaaacctttaaaatctgtatgtttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7348 aaaaagcctttgatttaatccgaagaaaaaatatcaaaacctttaaaatctgtatgtttc 7289
Query: 448 caaaatctggatattctttcacttaactgaaactgttcaatatgaaaagtttgaaaattg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 caaaatctggatattctttcacttaactgaaactgttcaatatgaaaagtttgaaaattg 7229
Query: 508 atgaatttggccaatttccctacagccgtgtggaaacaatataatgaaaaacagaaaaat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 atgaatttggccaatttccctacagccgtgtggaaacaatataatgaaaaacagaaaaat 7169
Query: 568 acacttaaactagaaccacagtccgcctgtgtatttggtatgctatgtgtatttgtctgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 acacttaaactagaaccacagtccgcctgtgtatttggtatgctatgtgtatttgtctgc 7109
Query: 628 gctctattttttctaaagtactaatctcttgtctgatagtactctaacctcctatatatg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 gctctattttttctaaagtactaatctcttgtctgatagtactctaacctcctatatatg 7049
Query: 688 tgcttgttaccgtgtttgctgtgtgatctacaaaagtgaaagacaaccacagctaaagat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 tgcttgttaccgtgtttgctgtgtgatctacaaaagtgaaagacaaccacagctaaagat 6989
Query: 748 ttcgttagtgtaggtgtagactgatgttatgatttgggaatgtgtcataagattcattta 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988 ttcgttagtgtaggtgtagactgatgttatgatttgggaatgtgtcataagattcattta 6929
Query: 808 tatatgggttaaatagaaaacgctcaagacagacaaagcagaagttactagaaaacaagn 867
||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 6928 tatatggtttaaatagaaaacgctcaagacagacaaagcagaagtaactag-aaacaag- 6871
Query: 868 aaacagagaagtgggtgttttttgggtttggataggcattcgctatgcccc 918
|||||||||||| ||||||||| || |||||||||||| |||||||||||
Sbjct: 6870 aaacagagaagtaggtgttttt--gggttggataggcatccgctatgcccc 6822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,415
Number of Sequences: 1807
Number of extensions: 12415
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)