BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC01RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1251 1178 0.0
>3x_Contig1251
Length = 6331
Score = 1178 bits (594), Expect = 0.0
Identities = 616/622 (99%), Gaps = 1/622 (0%)
Strand = Plus / Plus
Query: 49 caaacgtactggattatatacggtgagtggtttggatttctcggactcattattaccact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3562 caaacgtactggattatatacggtgagtggtttggatttctcggactcattattaccact 3621
Query: 109 gtttatagaaatagaaaaggtcaacaaaaaactggctggcaatcgttctcgttgttaatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3622 gtttatagaaatagaaaaggtcaacaaaaaactggctggcaatcgttctcgttgttaatt 3681
Query: 169 tcgtggtagttttagagactttccagtacattattaaaaggaagatgaaatcgaaagtgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3682 tcgtggtagttttagagactttccagtacattattaaaaggaagatgaaatcgaaagtgt 3741
Query: 229 ggagtgaggcaagagtctatagtgatgccaacgagattcgtggtcaaagatactgggact 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3742 ggagtgaggcaagagtctatagtgatgccaacgagattcgtggtcaaagatactgggact 3801
Query: 289 atgaaaatacatcaatagaatggaaggctaataactcacagtacgaagttgaatgcaaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3802 atgaaaatacatcaatagaatggaaggctaataactcacagtacgaagttgaatgcaaag 3861
Query: 349 ttggccgtggtaaatatagtgaagttttccaaggcgtacagttatccacgagaaataaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3862 ttggccgtggtaaatatagtgaagttttccaaggcgtacagttatccacgagaaataaga 3921
Query: 409 ttgtcattaagatgctaaaacctgtgaagaagaagaagattaagagagaaattaccatac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 ttgtcattaagatgctaaaacctgtgaagaagaagaagattaagagagaaattaccatac 3981
Query: 469 ttgcaaacctctcgaatgagaagaatccgccaactgcgcaaccttacgatgaggcaaaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 ttgcaaacctctcgaatgagaagaatccgccaactgcgcaaccttacgatgaggcaaaat 4041
Query: 529 attacacaaacagaagagaagaagttctgaaatatgcgagagataaagtatatgacttac 588
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4042 attacacaaacagaagagaagaagtactgaaatatgcgagagataaagtatatgacttac 4101
Query: 589 ctcataacgggcatgagaatattataacattgttagatgtggtcagagattccctattcc 648
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 4102 ctcataacgggcatgagaatattataacattgttagatgtggtcagagatcccata-tcc 4160
Query: 649 aagacacctgctttgaattttg 670
||||||||||| |||| |||||
Sbjct: 4161 aagacacctgcattgatttttg 4182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7874
Number of Sequences: 1807
Number of extensions: 7874
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)